![[BACK]](/icons/cvsweb/back.gif){kind=icon}
Up to [local] / OpenXM / src / R / r-packages / hgm
Request diff between arbitrary revisions
Default branch: MAIN
Revision 1.27 / (download) - annotate - [select for diffs], Thu Apr 7 00:56:44 2022 UTC (2 years, 7 months ago) by takayama
Branch: MAIN
CVS Tags: HEAD
Changes since 1.26: +3 -3
lines
Diff to previous 1.26 (colored) to selected 1.6 (colored)
\url --> \doi
Revision 1.26 / (download) - annotate - [select for diffs], Wed Apr 6 01:03:42 2022 UTC (2 years, 7 months ago) by takayama
Branch: MAIN
Changes since 1.25: +3 -3
lines
Diff to previous 1.25 (colored) to selected 1.6 (colored)
R project has changed calling sequence of F77 functions with string arguments. See https://cran.r-project.org/doc/manuals/r-devel/R-exts.html#Fortran-character-strings
Revision 1.25 / (download) - annotate - [select for diffs], Thu Feb 6 05:58:17 2020 UTC (4 years, 9 months ago) by takayama
Branch: MAIN
Changes since 1.24: +3 -1
lines
Diff to previous 1.24 (colored) to selected 1.6 (colored)
A note on checking the package hgm on r-devel env.
Revision 1.24 / (download) - annotate - [select for diffs], Sat Nov 16 11:03:43 2019 UTC (5 years ago) by takayama
Branch: MAIN
Changes since 1.23: +2 -2
lines
Diff to previous 1.23 (colored) to selected 1.6 (colored)
R package for the new hgm.ncso3(log=1) in the previous commit.
Revision 1.23 / (download) - annotate - [select for diffs], Wed Mar 22 00:42:56 2017 UTC (7 years, 7 months ago) by takayama
Branch: MAIN
Changes since 1.22: +2 -2
lines
Diff to previous 1.22 (colored) to selected 1.6 (colored)
.C(..., package=...) should be .C(..., PACKAGE=...)
Revision 1.22 / (download) - annotate - [select for diffs], Sun Oct 30 01:10:19 2016 UTC (8 years ago) by takayama
Branch: MAIN
Changes since 1.21: +1 -1
lines
Diff to previous 1.21 (colored) to selected 1.6 (colored)
Removed warnings by -Wpedantic.
Revision 1.21 / (download) - annotate - [select for diffs], Mon May 30 00:38:18 2016 UTC (8 years, 5 months ago) by takayama
Branch: MAIN
Changes since 1.20: +2 -2
lines
Diff to previous 1.20 (colored) to selected 1.6 (colored)
If evaluation of pFq is near the radius of convergence, it outputs the warning. See SERIES_ADMISSIBLE_RADIUS. Example: plot(hgm.p2wishart(m=2,beta=c(20,0.03),q0=0.3,q=300,autoplot=1)) plot(hgm.p2wishart(m=2,beta=c(20,0.03),q0=0.1,q=300,autoplot=1))
Revision 1.20 / (download) - annotate - [select for diffs], Tue Mar 1 07:29:18 2016 UTC (8 years, 8 months ago) by takayama
Branch: MAIN
Changes since 1.19: +2 -2
lines
Diff to previous 1.19 (colored) to selected 1.6 (colored)
Change for dp=0 or dp < 0.
Revision 1.19 / (download) - annotate - [select for diffs], Mon Feb 15 07:42:07 2016 UTC (8 years, 9 months ago) by takayama
Branch: MAIN
Changes since 1.18: +2 -2
lines
Diff to previous 1.18 (colored) to selected 1.6 (colored)
Added an explanation on error control of the adaptive Runge-Kutta. See todo in mh.c on a crash of R by an example in note.txt
Revision 1.18 / (download) - annotate - [select for diffs], Sat Feb 13 22:56:50 2016 UTC (8 years, 9 months ago) by takayama
Branch: MAIN
Changes since 1.17: +2 -2
lines
Diff to previous 1.17 (colored) to selected 1.6 (colored)
Fixed typos. autoplot=1 sets dp automatically.
Revision 1.17 / (download) - annotate - [select for diffs], Sat Feb 13 06:47:50 2016 UTC (8 years, 9 months ago) by takayama
Branch: MAIN
Changes since 1.16: +2 -2
lines
Diff to previous 1.16 (colored) to selected 1.6 (colored)
The initial version of new R package including 2F1
Revision 1.16 / (download) - annotate - [select for diffs], Thu Apr 2 00:11:32 2015 UTC (9 years, 7 months ago) by takayama
Branch: MAIN
Changes since 1.15: +1 -1
lines
Diff to previous 1.15 (colored) to selected 1.6 (colored)
1. Memory leak is fixed in jack-n.c 2. An error handling is added for R.
Revision 1.15 / (download) - annotate - [select for diffs], Thu Mar 26 06:45:10 2015 UTC (9 years, 7 months ago) by takayama
Branch: MAIN
Changes since 1.14: +2 -2
lines
Diff to previous 1.14 (colored) to selected 1.6 (colored)
Functions for Fisher-Bingham distribution are moved to the new package hgm_fb.
Revision 1.14 / (download) - annotate - [select for diffs], Tue Mar 24 07:49:06 2015 UTC (9 years, 7 months ago) by takayama
Branch: MAIN
Changes since 1.13: +2 -3
lines
Diff to previous 1.13 (colored) to selected 1.6 (colored)
Cosmetic changes for the submission to cran. It has not yet been completed...
Revision 1.13 / (download) - annotate - [select for diffs], Sat Mar 21 22:49:34 2015 UTC (9 years, 7 months ago) by takayama
Branch: MAIN
Changes since 1.12: +3 -3
lines
Diff to previous 1.12 (colored) to selected 1.6 (colored)
Updated the manual to add some notes on the limitation of the function cwishart.
Revision 1.12 / (download) - annotate - [select for diffs], Wed Apr 9 05:11:48 2014 UTC (10 years, 7 months ago) by takayama
Branch: MAIN
CVS Tags: RELEASE_1_3_1_13b
Changes since 1.11: +2 -2
lines
Diff to previous 1.11 (colored) to selected 1.6 (colored)
The hgm package is upgraded to 1.8. In this version, the bug of t-gsl-1 (gsl_coerce_double, bug in step size adjustments in t-evolve.c) is fixed.
Revision 1.11 / (download) - annotate - [select for diffs], Mon Mar 31 06:20:06 2014 UTC (10 years, 7 months ago) by takayama
Branch: MAIN
Changes since 1.10: +1 -1
lines
Diff to previous 1.10 (colored) to selected 1.6 (colored)
The function mleFBByOptim performs a maximal likelihood estimate of the Fisher-Bingham distribution
by Optim and hgm_ko_ncfb (outer program by HGM).
hgm_ko_ncfb is installed from OpenXM/src/hgm/fisher-bingham/src
hgm.mleDemo("astro")
hgm.mleDemo("mag")
hgm.mleDemo("s3e1")
....
are demos.
Revision 1.10 / (download) - annotate - [select for diffs], Mon Mar 31 00:49:51 2014 UTC (10 years, 7 months ago) by takayama
Branch: MAIN
Changes since 1.9: +3 -3
lines
Diff to previous 1.9 (colored) to selected 1.6 (colored)
hgm.ncBingham is an alias to hgm.se.hgm.Bingham. Example. > library(hgm) Loading required package: deSolve > hgm.ncBingham(c(1,3,5)); [1] 17.640021 2.371808 4.166681 9.192789 > hgm.ncBingham(c(1,3,5,6)); [1] 39.918359 3.948743 6.039318 10.854341 15.742235 > hgm.ncBingham(c(1,3,5,6,10)); [1] 302.18060 18.39045 24.12517 34.42539 43.00941 165.81628 > hgm.ncBingham(c(1,3,5,6,10,12)); [1] 1359.53150 65.15867 80.34557 104.24621 121.92847 304.56343 623.78715 > hgm.ncBingham(c(1,3,5,6,10,12,13)); [1] 3746.9919 157.2332 188.3426 234.1278 265.9428 539.4425 924.3876 [8] 1292.3312
Revision 1.9 / (download) - annotate - [select for diffs], Tue Mar 25 02:25:26 2014 UTC (10 years, 7 months ago) by takayama
Branch: MAIN
Changes since 1.8: +5 -4
lines
Diff to previous 1.8 (colored) to selected 1.6 (colored)
hgm.se.hgm function is added. hgm.Rhgm.demo1() shows an example. The source of this demo is in se_demo.R (commit by a proxy of Tomonari Sei)
Revision 1.8 / (download) - annotate - [select for diffs], Mon Mar 24 05:28:17 2014 UTC (10 years, 7 months ago) by takayama
Branch: MAIN
Changes since 1.7: +3 -3
lines
Diff to previous 1.7 (colored) to selected 1.6 (colored)
Added the first version of the manual page with hgm.ncorthant.
Revision 1.7 / (download) - annotate - [select for diffs], Sun Mar 16 03:11:07 2014 UTC (10 years, 8 months ago) by takayama
Branch: MAIN
Changes since 1.6: +2 -2
lines
Diff to previous 1.6 (colored)
Options automatic, assigned_series_error, verbose are added to the R-function hgm.pwishart. See the manual for details.
Revision 1.6 / (download) - annotate - [selected], Tue Mar 26 05:53:56 2013 UTC (11 years, 7 months ago) by takayama
Branch: MAIN
Changes since 1.5: +2 -2
lines
Diff to previous 1.5 (colored)
Change the function name from hgm.cwishart to hgm.pwishart to follow the standard naming convention of R (cf. pnorm, ...). The argument name x is also changed to q. The version is now 1.3 and I will add argument checks and authomatic parameter controls (#ticket-2013-03-26-a#).
Revision 1.5 / (download) - annotate - [select for diffs], Thu Mar 7 07:21:58 2013 UTC (11 years, 8 months ago) by takayama
Branch: MAIN
Changes since 1.4: +2 -2
lines
Diff to previous 1.4 (colored) to selected 1.6 (colored)
Updated to the version 1.2.
Revision 1.4 / (download) - annotate - [select for diffs], Fri Mar 1 05:27:08 2013 UTC (11 years, 8 months ago) by takayama
Branch: MAIN
Changes since 1.3: +1 -1
lines
Diff to previous 1.3 (colored) to selected 1.6 (colored)
The manual is added for the version 1.1.
Revision 1.3 / (download) - annotate - [select for diffs], Thu Feb 21 23:35:07 2013 UTC (11 years, 8 months ago) by takayama
Branch: MAIN
Changes since 1.2: +2 -2
lines
Diff to previous 1.2 (colored) to selected 1.6 (colored)
The initial version of including mh(matrix hypergeometric) in R (#milestone 2013-02-22-a#).
Revision 1.2 / (download) - annotate - [select for diffs], Fri Feb 8 01:27:01 2013 UTC (11 years, 9 months ago) by takayama
Branch: MAIN
Changes since 1.1: +6 -6
lines
Diff to previous 1.1 (colored) to selected 1.6 (colored)
Several cosmetic changings including documentation. Use of NAMESPACE.
Revision 1.1 / (download) - annotate - [select for diffs], Thu Feb 7 07:38:22 2013 UTC (11 years, 9 months ago) by takayama
Branch: MAIN
Diff to selected 1.6 (colored)
The initial version of the standalone package hgm and the R-package hgm. The hgm is a package for the holonomic gradient method. The design outline will be posted at http://fe.math.kobe-u.ac.jp/Movies/oxvh.