CVS log for OpenXM/src/R/r-packages/hgm/NAMESPACE

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Revision 1.13 / (download) - annotate - [select for diffs], Sat Feb 13 06:47:50 2016 UTC (8 years, 9 months ago) by takayama
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Diff to previous 1.12 (colored) to selected 1.4 (colored)

The initial version of new R package including 2F1

Revision 1.12 / (download) - annotate - [select for diffs], Thu Mar 26 06:45:10 2015 UTC (9 years, 7 months ago) by takayama
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Functions for Fisher-Bingham distribution are moved to the new package hgm_fb.

Revision 1.11 / (download) - annotate - [select for diffs], Wed Mar 25 07:43:03 2015 UTC (9 years, 7 months ago) by takayama
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rk is defined in the package deSolve. The package should be imported.

Revision 1.10 / (download) - annotate - [select for diffs], Tue Mar 24 07:49:06 2015 UTC (9 years, 7 months ago) by takayama
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Changes since 1.9: +0 -6 lines
Diff to previous 1.9 (colored) to selected 1.4 (colored)

Cosmetic changes for the submission to cran. It has not yet been completed...

Revision 1.9 / (download) - annotate - [select for diffs], Sat Mar 21 23:44:49 2015 UTC (9 years, 7 months ago) by takayama
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Change the name hgm.mle to hgm.z.mle in the NAMESPACE.

Revision 1.8 / (download) - annotate - [select for diffs], Mon Mar 31 06:20:06 2014 UTC (10 years, 7 months ago) by takayama
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CVS Tags: RELEASE_1_3_1_13b
Changes since 1.7: +4 -0 lines
Diff to previous 1.7 (colored) to selected 1.4 (colored)

The function mleFBByOptim performs a maximal likelihood estimate of the Fisher-Bingham distribution
by Optim and hgm_ko_ncfb (outer program by HGM).
hgm_ko_ncfb is installed from OpenXM/src/hgm/fisher-bingham/src

hgm.mleDemo("astro")
hgm.mleDemo("mag")
hgm.mleDemo("s3e1")
....
are demos.

Revision 1.7 / (download) - annotate - [select for diffs], Mon Mar 31 00:49:51 2014 UTC (10 years, 7 months ago) by takayama
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Changes since 1.6: +3 -1 lines
Diff to previous 1.6 (colored) to selected 1.4 (colored)

hgm.ncBingham is an alias to hgm.se.hgm.Bingham.
Example.
> library(hgm)
Loading required package: deSolve
> hgm.ncBingham(c(1,3,5));
[1] 17.640021  2.371808  4.166681  9.192789
> hgm.ncBingham(c(1,3,5,6));
[1] 39.918359  3.948743  6.039318 10.854341 15.742235
> hgm.ncBingham(c(1,3,5,6,10));
[1] 302.18060  18.39045  24.12517  34.42539  43.00941 165.81628
> hgm.ncBingham(c(1,3,5,6,10,12));
[1] 1359.53150   65.15867   80.34557  104.24621  121.92847  304.56343  623.78715
> hgm.ncBingham(c(1,3,5,6,10,12,13));
[1] 3746.9919  157.2332  188.3426  234.1278  265.9428  539.4425  924.3876
[8] 1292.3312

Revision 1.6 / (download) - annotate - [select for diffs], Tue Mar 25 02:25:26 2014 UTC (10 years, 7 months ago) by takayama
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Changes since 1.5: +2 -0 lines
Diff to previous 1.5 (colored) to selected 1.4 (colored)

hgm.se.hgm function is added.
hgm.Rhgm.demo1() shows an example.
The source of this demo is in se_demo.R
(commit by a proxy of Tomonari Sei)

Revision 1.5 / (download) - annotate - [select for diffs], Mon Mar 24 02:34:25 2014 UTC (10 years, 7 months ago) by takayama
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Changes since 1.4: +3 -1 lines
Diff to previous 1.4 (colored)

The orthant module is linked with Makevars.
hgm.ncorthant<-hgm.ko.ncorthant is defined in zhgm_names.R

Revision 1.4 / (download) - annotate - [selected], Sat Mar 22 00:15:40 2014 UTC (10 years, 7 months ago) by takayama
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Changes since 1.3: +3 -1 lines
Diff to previous 1.3 (colored)

R function names are changed following style-ja.txt.
R file names are not changed to keep changelogs. For example,
hgm.so3nc.R should be tk_hgm.so3nc.R and it will be changed in a future.
Note that names of exporting function names should be listed in the NAMESPACE file.

Revision 1.3 / (download) - annotate - [select for diffs], Tue Mar 26 05:53:57 2013 UTC (11 years, 7 months ago) by takayama
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Changes since 1.2: +1 -1 lines
Diff to previous 1.2 (colored) to selected 1.4 (colored)

Change the function name from hgm.cwishart to hgm.pwishart to follow
the standard naming convention of R (cf. pnorm, ...).
The argument name x is also changed to q.

The version is now 1.3 and I will add argument checks and authomatic parameter controls
(#ticket-2013-03-26-a#).

Revision 1.2 / (download) - annotate - [select for diffs], Sat Feb 23 07:00:21 2013 UTC (11 years, 8 months ago) by takayama
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Changes since 1.1: +1 -0 lines
Diff to previous 1.1 (colored) to selected 1.4 (colored)

hgm.cwishart of computing the cumulative distribution function of random wishart matrix
is implemented as an R function. #milestone 2013-02-23-a#.
We need several small changes and adjustments to complete this project.

Revision 1.1 / (download) - annotate - [select for diffs], Fri Feb 8 01:27:01 2013 UTC (11 years, 9 months ago) by takayama
Branch: MAIN
Diff to selected 1.4 (colored)

Several cosmetic changings including documentation.
Use of NAMESPACE.

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