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Annotation of OpenXM/src/R/r-packages/hgm/man/hgm.se.hgm.Bingham.Rd, Revision 1.6

1.6     ! takayama    1: % $OpenXM: OpenXM/src/R/r-packages/hgm/man/hgm.se.hgm.Bingham.Rd,v 1.5 2015/03/26 11:54:13 takayama Exp $
1.2       takayama    2: \name{hgm.ncBingham}
1.4       takayama    3: \alias{hgm.ncBingham}
1.2       takayama    4: %\alias{hgm.se.hgm.Bingham}
1.1       sei         5: %- Also NEED an '\alias' for EACH other topic documented here.
                      6: \title{
1.2       takayama    7:     The function hgm.ncBingham performs the holonomic gradient method (HGM)
1.1       sei         8:    for Bingham distributions.
                      9: }
                     10: \description{
1.2       takayama   11:    The function hgm.ncBingham performs the holonomic gradient method (HGM)
1.1       sei        12:    for Bingham distributions with the deSolve package in R.
                     13: }
                     14: \usage{
1.5       takayama   15:  hgm.ncBingham(th, d=rep(1,length(th)+1), logarithm=FALSE,
                     16:                ini.method="power", times=NULL, withvol=FALSE, ...)
1.1       sei        17: }
                     18: %- maybe also 'usage' for other objects documented here.
                     19: \arguments{
                     20:   \item{th}{ A (p-1)-dimensional vector which specifies the first (p-1) components of the parameter vector of the Bingham distribution on the (p-1)-dim sphere. The p-th parameter is assumed to be zero.}
                     21:   \item{d}{
                     22:      A p-dimensional vector which specifies the multiplicity of the parameter. The default is all-one vector.
                     23:   }
                     24:   \item{logarithm}{
                     25:      If 'logarithm' is TRUE, then the result is log of the normalizing constant.
                     26:   }
                     27:   \item{ini.method}{
                     28:      The method for computing the initial value. Only "power" is implemented now.
                     29:   }
                     30:   \item{times}{
                     31:      a vector; times in [0,1] at which explicit estimates for G are desired.
                     32:      If time = NULL, the set {0,1} is used, and only the final value is returned.
                     33:   }
                     34:   \item{withvol}{
                     35:      If 'withvol' is TRUE, then the normalizing constant with volume of sphere is returned.
                     36:      Otherwise that without volume is returned.
                     37:      Therefore, if 'withvol' is FALSE and the parameter is zero, then the normalizing constant becomes 1.
                     38:   }
                     39:   \item{...}{
                     40:      Additional parameters for computing initial values. Details are omitted.
                     41:   }
                     42: }
                     43: \details{
1.2       takayama   44:   The function hgm.ncBingham computes the normalizing constant
1.1       sei        45:   of the Bingham distribution and its derivatives at any specified point.
                     46:   The initial value is computed by the power series expansion.
                     47: %  \code{\link[RCurl]{postForm}}.
                     48: }
                     49: \value{
                     50: The output is p-dimensional vector G.
                     51: The first element of G is the normalizing constant
                     52: and the following (p-1)-elements are partial derivative
                     53: of the normalizing constant with respect to the first
                     54: (p-1) components of the parameter 'th'.
                     55: }
                     56: \references{
                     57: \url{http://www.math.kobe-u.ac.jp/OpenXM/Math/hgm/ref-hgm.html}
                     58: }
                     59: \author{
                     60: Tomonari Sei
                     61: }
1.6     ! takayama   62: %\note{
        !            63: %%%  ~~further notes~~
        !            64: %}
1.1       sei        65:
                     66: %% ~Make other sections like Warning with \section{Warning }{....} ~
                     67:
1.6     ! takayama   68: %\seealso{
        !            69: %%%\code{\link{oxm.matrix_r2tfb}}
        !            70: %}
1.1       sei        71: \examples{
                     72: # Example 1.
1.2       takayama   73: hgm.ncBingham(c(1,3,5))
1.1       sei        74: }
                     75: % Add one or more standard keywords, see file 'KEYWORDS' in the
                     76: % R documentation directory.
                     77: \keyword{ Normalization constant }
                     78: \keyword{ Holonomic gradient method }
                     79: \keyword{ HGM }
                     80:
                     81: