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Diff for /OpenXM/src/R/r-packages/note.txt between version 1.3 and 1.6

version 1.3, 2015/03/24 07:49:06 version 1.6, 2016/02/15 07:42:07
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 $OpenXM: OpenXM/src/R/r-packages/note.txt,v 1.2 2013/02/09 02:58:14 takayama Exp $  $OpenXM: OpenXM/src/R/r-packages/note.txt,v 1.5 2015/04/05 23:47:46 takayama Exp $
   
 See also OpenXM/src/hgm/note.txt  See also OpenXM/src/hgm/note.txt
   
Line 54  export(hgm.z.mleDemo)
Line 54  export(hgm.z.mleDemo)
 export(hgm.ssFB)  export(hgm.ssFB)
   
   
   * Check the memory leak by valgrind and by AddressSanitizer. 2015.04.01
   ** Valgrind
   apt-get install valgrind
   
   cat >>~/.valgrindrc
   --leak-check=full
   --track-origins=yes
   ctrl-D
   
   R CMD check hgm --use-valgrind
   more hgm.Rcheck/hgm-Ex.Rout
   Example of an error (Note that there is no error message in *.log)
   ==14813== Conditional jump or move depends on uninitialised value(s)
   ==14813==    at 0xCA20170: mh_t (jack-n.c:1361)
     for (i=0; i<=M_m; i++) {
       -- snip
       serror = myabs((partial_sum[i]-partial_sum[i-1])/partial_sum[i-1]);
     }
     partial_sum[-1] is accessed!
   
   As to details, search "valgrind" in R-exts.pdf
   
   * R CMD check hgm --use-gct
   
   * Note on building R package: @s/2015/04/05-hgm-r-package-memo.txt
   
   ;;
   2016.02.15  testdata.
   c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,autoplot=1);
     output is wrong.
   c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,err=c(1e-30,1e-10),mode=c(1,1,0))
     output is correct.
   c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,err=c(1e-30,1e-10),autoplot=1)
     crashed, but by commented out todo in mh.c, it works. See @s/2016/02
   

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