| version 1.2, 2013/02/09 02:58:14 |
version 1.6, 2016/02/15 07:42:07 |
|
|
| $OpenXM: OpenXM/src/R/r-packages/note.txt,v 1.1 2013/02/08 03:00:32 takayama Exp $ |
$OpenXM: OpenXM/src/R/r-packages/note.txt,v 1.5 2015/04/05 23:47:46 takayama Exp $ |
| |
|
| See also OpenXM/src/hgm/note.txt |
See also OpenXM/src/hgm/note.txt |
| |
|
| Line 44 See also OpenXM/src/hgm/note.txt |
|
| Line 44 See also OpenXM/src/hgm/note.txt |
|
| dyn.load("hgm.so") can be used to load shared library by hand. |
dyn.load("hgm.so") can be used to load shared library by hand. |
| getwd() gets the current working directory. |
getwd() gets the current working directory. |
| |
|
| |
|
| |
* Undocumented functions which are removed temporary fro NAMESPACE. 2015.03.24 |
| |
export(hgm.so3nc) |
| |
export(hgm.normalizingConstantOfFisherDistributionOnSO3) |
| |
export(hgm.normalizingConstantOfOrthant) |
| |
export(hgm.normalizingConstantOfBinghamDistribution) |
| |
export(hgm.z.mleDemo) |
| |
export(hgm.ssFB) |
| |
|
| |
|
| |
* Check the memory leak by valgrind and by AddressSanitizer. 2015.04.01 |
| |
** Valgrind |
| |
apt-get install valgrind |
| |
|
| |
cat >>~/.valgrindrc |
| |
--leak-check=full |
| |
--track-origins=yes |
| |
ctrl-D |
| |
|
| |
R CMD check hgm --use-valgrind |
| |
more hgm.Rcheck/hgm-Ex.Rout |
| |
Example of an error (Note that there is no error message in *.log) |
| |
==14813== Conditional jump or move depends on uninitialised value(s) |
| |
==14813== at 0xCA20170: mh_t (jack-n.c:1361) |
| |
for (i=0; i<=M_m; i++) { |
| |
-- snip |
| |
serror = myabs((partial_sum[i]-partial_sum[i-1])/partial_sum[i-1]); |
| |
} |
| |
partial_sum[-1] is accessed! |
| |
|
| |
As to details, search "valgrind" in R-exts.pdf |
| |
|
| |
* R CMD check hgm --use-gct |
| |
|
| |
* Note on building R package: @s/2015/04/05-hgm-r-package-memo.txt |
| |
|
| |
;; |
| |
2016.02.15 testdata. |
| |
c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,autoplot=1); |
| |
output is wrong. |
| |
c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,err=c(1e-30,1e-10),mode=c(1,1,0)) |
| |
output is correct. |
| |
c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,err=c(1e-30,1e-10),autoplot=1) |
| |
crashed, but by commented out todo in mh.c, it works. See @s/2016/02 |
| |
|
![[BACK]](/icons/cvsweb/back.gif){kind=icon}
Return to note.txt CVS log ![[TXT]](/icons/cvsweb/text.gif){kind=icon}
![[DIR]](/icons/cvsweb/dir.gif){kind=icon}
Up to [local] / OpenXM / src / R / r-packages