OpenXM/src/R/r-packages/note.txt - diff

Return to note.txt CVS log

Up to [local] / OpenXM / src / R / r-packages

Diff for /OpenXM/src/R/r-packages/note.txt between version 1.4 and 1.9

version 1.4, 2015/04/02 00:11:32

version 1.9, 2017/03/22 00:42:56

Line 1

$OpenXM: OpenXM/src/R/r-packages/note.txt,v 1.3 2015/03/24 07:49:06 takayama Exp $

$OpenXM: OpenXM/src/R/r-packages/note.txt,v 1.8 2016/10/30 01:10:18 takayama Exp $

See also OpenXM/src/hgm/note.txt

Line 28 See also OpenXM/src/hgm/note.txt

R CMD INSTALL hgm

library(hgm)

You can check hgm.so3nc by hand.

You can check hgm.ncso3 by hand.

R CMD REMOVE hgm

It is used to remove the test library.

Line 39 See also OpenXM/src/hgm/note.txt

R CMD build --binary hgm (perhaps, obsolete style)

(5) make copy-web-hgm

hgm_x.yz.tar.gz

[cran submit package] search ==> http://cran.r-project.org/submit.html

* Notes.

library.dynam() shows a list of shared libraries loaded.

dyn.load("hgm.so") can be used to load shared library by hand.

Line 63 cat >>~/.valgrindrc

Line 67 cat >>~/.valgrindrc

--track-origins=yes

ctrl-D

make clean

R CMD check hgm --use-valgrind

more hgm.Rcheck/hgm-Ex.Rout

Example of an error (Note that there is no error message in *.log)

Line 77 Example of an error (Note that there is no error messa

Line 82 Example of an error (Note that there is no error messa

As to details, search "valgrind" in R-exts.pdf

* R CMD check hgm --use-gct

* Note on building R package: @s/2015/04/05-hgm-r-package-memo.txt

;;

2016.02.15 testdata.

c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,autoplot=1);

output is wrong.

c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,err=c(1e-30,1e-10),mode=c(1,1,0))

output is correct.

c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,err=c(1e-30,1e-10),autoplot=1)

crashed, but by commented out todo in mh.c, it works. See @s/2016/02

;;

http://kbroman.org/pkg_primer/pages/cran.html

R CMD check hgm --as-cran

FreeBSD-CVSweb <freebsd-cvsweb@FreeBSD.org>