===================================================================
RCS file: /home/cvs/OpenXM/src/R/r-packages/note.txt,v
retrieving revision 1.1
retrieving revision 1.6
diff -u -p -r1.1 -r1.6
--- OpenXM/src/R/r-packages/note.txt	2013/02/08 03:00:32	1.1
+++ OpenXM/src/R/r-packages/note.txt	2016/02/15 07:42:07	1.6
@@ -1,4 +1,4 @@
-$OpenXM$
+$OpenXM: OpenXM/src/R/r-packages/note.txt,v 1.5 2015/04/05 23:47:46 takayama Exp $
 
 See also OpenXM/src/hgm/note.txt
 
@@ -33,10 +33,59 @@ See also OpenXM/src/hgm/note.txt
         It is used to remove the test library.
    
     R --help
+(4) Binary build on Windows.
+    R CMD INSTALL --build hgm
+    ( Check R CMD INSTALL --help for details. )
+   or
+    R CMD build --binary hgm  (perhaps, obsolete style) 
 
 * Notes.
     library.dynam()   shows a list of shared libraries loaded.
     dyn.load("hgm.so") can be used to load shared library by hand.
     getwd() gets the current working directory.
 
+
+* Undocumented functions which are removed temporary fro NAMESPACE. 2015.03.24
+export(hgm.so3nc)
+export(hgm.normalizingConstantOfFisherDistributionOnSO3)
+export(hgm.normalizingConstantOfOrthant)
+export(hgm.normalizingConstantOfBinghamDistribution)
+export(hgm.z.mleDemo)
+export(hgm.ssFB)
+
  
+* Check the memory leak by valgrind and by AddressSanitizer. 2015.04.01
+** Valgrind
+apt-get install valgrind
+
+cat >>~/.valgrindrc
+--leak-check=full
+--track-origins=yes
+ctrl-D
+
+R CMD check hgm --use-valgrind
+more hgm.Rcheck/hgm-Ex.Rout
+Example of an error (Note that there is no error message in *.log)  
+==14813== Conditional jump or move depends on uninitialised value(s)
+==14813==    at 0xCA20170: mh_t (jack-n.c:1361)
+  for (i=0; i<=M_m; i++) {
+    -- snip
+    serror = myabs((partial_sum[i]-partial_sum[i-1])/partial_sum[i-1]);
+  }
+  partial_sum[-1] is accessed!
+
+As to details, search "valgrind" in R-exts.pdf
+
+* R CMD check hgm --use-gct
+
+* Note on building R package: @s/2015/04/05-hgm-r-package-memo.txt
+
+;;
+2016.02.15  testdata.
+c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,autoplot=1);
+  output is wrong.
+c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,err=c(1e-30,1e-10),mode=c(1,1,0))
+  output is correct.
+c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,err=c(1e-30,1e-10),autoplot=1)
+  crashed, but by commented out todo in mh.c, it works. See @s/2016/02
+