===================================================================
RCS file: /home/cvs/OpenXM/src/R/r-packages/note.txt,v
retrieving revision 1.4
retrieving revision 1.11
diff -u -p -r1.4 -r1.11
--- OpenXM/src/R/r-packages/note.txt	2015/04/02 00:11:32	1.4
+++ OpenXM/src/R/r-packages/note.txt	2020/02/06 05:58:17	1.11
@@ -1,7 +1,17 @@
-$OpenXM: OpenXM/src/R/r-packages/note.txt,v 1.3 2015/03/24 07:49:06 takayama Exp $
+$OpenXM: OpenXM/src/R/r-packages/note.txt,v 1.10 2019/11/16 11:03:43 takayama Exp $
 
 See also OpenXM/src/hgm/note.txt
 
+* R package build, reference pages.
+https://cran.r-project.org/bin/macosx/tools/
+* Example
+  Edit files in src/hgm
+  cd R/r-packages
+  make rsync
+  R CMD INSTALL hgm
+  Start R and library(hgm)
+  hgm.ncso3()
+
 * C source codes.
  C sources and headers should be developed and edited in the directory
  OpenXM/src/hgm in order to provide a standalone mode without R
@@ -28,7 +38,7 @@ See also OpenXM/src/hgm/note.txt
     R CMD INSTALL hgm
         R
         library(hgm)
-        You can check hgm.so3nc by hand.
+        You can check hgm.ncso3 by hand.
     R CMD REMOVE hgm
         It is used to remove the test library.
    
@@ -39,6 +49,10 @@ See also OpenXM/src/hgm/note.txt
    or
     R CMD build --binary hgm  (perhaps, obsolete style) 
 
+(5) make copy-web-hgm
+   hgm_x.yz.tar.gz
+   [cran submit package] search ==> http://cran.r-project.org/submit.html
+
 * Notes.
     library.dynam()   shows a list of shared libraries loaded.
     dyn.load("hgm.so") can be used to load shared library by hand.
@@ -63,6 +77,7 @@ cat >>~/.valgrindrc
 --track-origins=yes
 ctrl-D
 
+make clean
 R CMD check hgm --use-valgrind
 more hgm.Rcheck/hgm-Ex.Rout
 Example of an error (Note that there is no error message in *.log)  
@@ -77,3 +92,38 @@ Example of an error (Note that there is no error messa
 As to details, search "valgrind" in R-exts.pdf
 
 * R CMD check hgm --use-gct
+
+* Note on building R package: @s/2015/04/05-hgm-r-package-memo.txt
+
+;;
+2016.02.15  testdata.
+c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,autoplot=1);
+  output is wrong.
+c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,err=c(1e-30,1e-10),mode=c(1,1,0))
+  output is correct.
+c<-hgm.p2wishart(m=4,n1=50,n2=100,beta=c(1,2,4,8),q0=0.5,q=30,err=c(1e-30,1e-10),autoplot=1)
+  crashed, but by commented out todo in mh.c, it works. See @s/2016/02
+
+;;
+http://kbroman.org/pkg_primer/pages/cran.html
+
+R CMD check hgm --as-cran
+
+
+;;
+2020.02.06  Installing r-devel
+ apt-get install subversion ccache
+ apt-get install xorg-dev
+ apt-get install libcurl4-openssl-dev
+ pushd ~/this19/R  (for example)
+ svn co https://svn.r-project.org/R/trunk r-devel/R
+ cd r-devel/R   and follow the INSTALL
+ ./configure --without-recommended-packages  --prefix ~/this19/R
+ make
+ export PATH=~/this19/R/r-devel/R/bin:$PATH
+
+
+Valgrid can be used by
+   valgrind ./a.out
+A sample:  main() { int n;  if (n>0) n=0; }
+