version 1.3, 2013/02/23 07:00:21 |
version 1.12, 2013/03/08 04:54:01 |
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/* $OpenXM: OpenXM/src/hgm/mh/src/mh.c,v 1.2 2013/02/23 06:01:53 takayama Exp $ */ |
/* $OpenXM: OpenXM/src/hgm/mh/src/mh.c,v 1.11 2013/03/07 07:02:18 takayama Exp $ */ |
#include <stdio.h> |
#include <stdio.h> |
#include "sfile.h" |
#include "sfile.h" |
#include "mh.h" |
#include "mh.h" |
#define WSIZE 1024 |
#define WSIZE 1024 |
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extern int MH_DEBUG; |
static imypower(int x,int n) { |
static int imypower(int x,int n) { |
int a,i; |
int a,i; |
a = 1; |
a = 1; |
for (i=0; i<n; i++) a = a*x; |
for (i=0; i<n; i++) a = a*x; |
Line 22 struct cWishart *new_cWishart(int rank) { |
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Line 22 struct cWishart *new_cWishart(int rank) { |
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} |
} |
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struct cWishart *mh_cwishart_gen(int m,int n,double beta[],double x0, |
struct cWishart *mh_cwishart_gen(int m,int n,double beta[],double x0, |
int approxDeg,double h, int dp, double x,int mode) { |
int approxDeg,double h, int dp, double x,int modep[]) { |
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/* |
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modep[0]. Do Koev-Edelman (ignored for now). |
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modep[1]. Do the HGM |
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modep[2]. Return modep[2] intermediate data. |
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*/ |
struct SFILE *fp; |
struct SFILE *fp; |
char swork[WSIZE]; |
char swork[WSIZE]; |
char *argv[WSIZE]; |
char *argv[WSIZE]; |
Line 68 struct cWishart *mh_cwishart_gen(int m,int n,double be |
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Line 73 struct cWishart *mh_cwishart_gen(int m,int n,double be |
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argv[5] = (char *)mh_malloc(128); |
argv[5] = (char *)mh_malloc(128); |
sprintf(argv[5],"%d",approxDeg); |
sprintf(argv[5],"%d",approxDeg); |
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rp=jk_main(6,argv); |
rp=jk_main(6,argv); |
if (rp == NULL) { |
if (rp == NULL) { |
fprintf(stderr,"rp is NULL.\n"); return(NULL); |
fprintf(stderr,"rp is NULL.\n"); return(NULL); |
} |
} |
cw = new_cWishart(rank); |
cw = new_cWishart(rank); |
cw->x = rp->x; |
cw->x = rp->x; |
cw->rank = rp->rank; |
cw->rank = rp->rank; |
for (i=0; i<cw->rank; i++) (cw->f)[i] = (rp->y)[i]; |
if (rank != cw->rank) { |
sfp = (rp->sfpp)[0]; |
fprintf(stderr,"Rank error.\n"); return(NULL); |
cw->aux = (char *) mh_malloc(sfp->len+1); |
} |
mh_outstr((char *)cw->aux,sfp->len+1,sfp); |
for (i=0; i<cw->rank; i++) (cw->f)[i] = (rp->y)[i]; |
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sfp = (rp->sfpp)[0]; |
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cw->aux = (char *) mh_malloc((sfp->len)+1); |
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mh_outstr((char *)(cw->aux),(sfp->len)+1,sfp); |
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/* todo, the following line seems to cause seg fault. */ |
/* deallocate the memory */ |
/* deallocate the memory */ |
for (i=0; i<rp->size; i++) mh_fclose((rp->sfpp)[i]); |
for (i=0; i<rp->size; i++) mh_fclose((rp->sfpp)[i]); |
/* todo, mh_free_??(rp); free Iv's */ |
/* todo, mh_free_??(rp); free Iv's */ |
if (mode == 0) return(cw); |
if (!modep[1]) return(cw); |
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if (MH_DEBUG) printf("\n\n%s\n",(char *)cw->aux); |
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/* This output is strange. */ |
/* Starting HGM */ |
/* Starting HGM */ |
argv[3] = (char *)cw->aux; |
argv[3] = (char *)cw->aux; |
argv[4] = "--dataf"; |
argv[4] = "--dataf"; |
Line 101 struct cWishart *mh_cwishart_gen(int m,int n,double be |
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Line 112 struct cWishart *mh_cwishart_gen(int m,int n,double be |
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cw->aux = (char *) mh_malloc(sfp->len+1); |
cw->aux = (char *) mh_malloc(sfp->len+1); |
mh_outstr((char *)cw->aux,sfp->len+1,sfp); |
mh_outstr((char *)cw->aux,sfp->len+1,sfp); |
} |
} |
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sfp = (rp->sfpp)[1]; |
sfp = (rp->sfpp)[1]; |
if (sfp) { |
if (sfp) { |
cw->aux2 = (char *) mh_malloc(sfp->len+1); |
cw->aux2 = (char *) mh_malloc(sfp->len+1); |
Line 115 struct cWishart *mh_cwishart_gen(int m,int n,double be |
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Line 125 struct cWishart *mh_cwishart_gen(int m,int n,double be |
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/* Cumulative probability distribution function of the first eigenvalue of |
/* Cumulative probability distribution function of the first eigenvalue of |
Wishart matrix by Series */ |
Wishart matrix by Series */ |
struct cWishart *mh_cwishart_s(int m,int n,double beta[],double x0, |
struct cWishart *mh_cwishart_s(int m,int n,double beta[],double x0, |
int approxDeg,double h, int dp, double x) { |
int approxDeg,double h, int dp, double x) { |
return(mh_cwishart_gen(m,n,beta,x0,approxDeg,h,dp,x,0)); |
int modep[]={1,0,0}; |
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return(mh_cwishart_gen(m,n,beta,x0,approxDeg,h,dp,x,modep)); |
} |
} |
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/* Cumulative probability distribution function of the first eigenvalue of |
/* Cumulative probability distribution function of the first eigenvalue of |
Wishart matrix by HGM */ |
Wishart matrix by HGM */ |
struct cWishart *mh_cwishart_hgm(int m,int n,double beta[],double x0, |
struct cWishart *mh_cwishart_hgm(int m,int n,double beta[],double x0, |
int approxDeg, double h, int dp , double x) |
int approxDeg, double h, int dp , double x) |
{ |
{ |
return(mh_cwishart_gen(m,n,beta,x0,approxDeg,h,dp,x,1)); |
int modep[]={1,1,0}; |
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return(mh_cwishart_gen(m,n,beta,x0,approxDeg,h,dp,x,modep)); |
} |
} |
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#ifdef STANDALONE |
#ifdef STANDALONE |
main() { |
main(int argc,char *argv[]) { |
double beta[5]={1.0,2.0,3.0,4.0,5.0}; |
double beta[5]={1.0,2.0,3.0,4.0,5.0}; |
struct cWishart *cw; |
struct cWishart *cw; |
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struct SFILE *sfp; |
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char *s; |
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char str[1024]; |
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double x; |
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int i,show; |
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int strategy=0; |
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double err[2]={-1.0,-1.0}; |
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show=1; |
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for (i=1; i<argc; i++) { |
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if (strcmp(argv[i],"--strategy")==0) { |
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i++; sscanf(argv[i],"%d",&strategy); |
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}else if (strcmp(argv[i],"--abserr")==0) { |
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i++; sscanf(argv[i],"%lg",&(err[0])); |
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}else if (strcmp(argv[i],"--relerr")==0) { |
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i++; sscanf(argv[i],"%lg",&(err[1])); |
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}else if (strcmp(argv[i],"--quiet")==0) { |
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show=0; |
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}else{ |
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fprintf(stderr,"Unknown option.\n"); |
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} |
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} |
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mh_set_strategy(strategy,err); |
cw=mh_cwishart_hgm(3,5,beta,0.3,7, 0.01,1,10); |
cw=mh_cwishart_hgm(3,5,beta,0.3,7, 0.01,1,10); |
if (cw != NULL) { |
if (cw != NULL) { |
printf("x=%lf, y=%lf\n",cw->x,(cw->f)[0]); |
printf("x=%lf, y=%lf\n",cw->x,(cw->f)[0]); |
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cw=mh_cwishart_hgm(4,5,beta,0.3,7, 0.01,1,10); |
cw=mh_cwishart_hgm(4,5,beta,0.3,7, 0.01,1,10); |
if (cw != NULL) { |
if (cw != NULL) { |
printf("x=%lf, y=%lf\n",cw->x,(cw->f)[0]); |
printf("x=%lf, y=%lf\n",cw->x,(cw->f)[0]); |
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s = (char *)cw->aux; |
/* printf("%s",(char *)cw->aux); */ |
/* printf("%s",(char *)cw->aux); */ |
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if (show) { |
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sfp = mh_fopen(s,"r",0); |
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while (mh_fgets(str,1024,sfp)) { |
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sscanf(str,"%lg",&x); printf("%lg\n",x); |
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} |
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mh_fclose(sfp); |
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} |
} |
} |
} |
} |
main1() { |
main1() { |