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Diff for /OpenXM/src/hgm/mh/src/mh.c between version 1.11 and 1.15

version 1.11, 2013/03/07 07:02:18 version 1.15, 2015/04/02 01:11:13
Line 1 
Line 1 
 /* $OpenXM: OpenXM/src/hgm/mh/src/mh.c,v 1.10 2013/03/07 05:23:31 takayama Exp $ */  /* $OpenXM: OpenXM/src/hgm/mh/src/mh.c,v 1.14 2015/03/24 05:59:43 takayama Exp $ */
 #include <stdio.h>  #include <stdio.h>
   #include <string.h>
 #include "sfile.h"  #include "sfile.h"
 #include "mh.h"  #include "mh.h"
 #define WSIZE 1024  #define WSIZE 1024
 extern int MH_DEBUG;  extern int MH_DEBUG;
   extern int M_show_autosteps;
 static int imypower(int x,int n) {  static int imypower(int x,int n) {
   int a,i;    int a,i;
   a = 1;    a = 1;
Line 22  struct cWishart *new_cWishart(int rank) {
Line 24  struct cWishart *new_cWishart(int rank) {
 }  }
   
 struct cWishart *mh_cwishart_gen(int m,int n,double beta[],double x0,  struct cWishart *mh_cwishart_gen(int m,int n,double beta[],double x0,
                               int approxDeg,double h, int dp, double x,int modep[]) {                                   int approxDeg,double h, int dp, double x,int modep[],
                                  int automatic,double assigned_series_error,
                                  int verbose)
   {
   /*    /*
      modep[0]. Do Koev-Edelman (ignored for now).       modep[0]. Do Koev-Edelman (ignored for now).
      modep[1]. Do the HGM       modep[1]. Do the HGM
Line 31  struct cWishart *mh_cwishart_gen(int m,int n,double be
Line 36  struct cWishart *mh_cwishart_gen(int m,int n,double be
   struct SFILE *fp;    struct SFILE *fp;
   char swork[WSIZE];    char swork[WSIZE];
   char *argv[WSIZE];    char *argv[WSIZE];
     int argc;
   int i,rank;    int i,rank;
   char *comm;    char *comm;
   struct MH_RESULT *rp;    struct MH_RESULT *rp;
Line 54  struct cWishart *mh_cwishart_gen(int m,int n,double be
Line 60  struct cWishart *mh_cwishart_gen(int m,int n,double be
   mh_fputs("%%Iv\n",fp); /* initial values, dummy */    mh_fputs("%%Iv\n",fp); /* initial values, dummy */
   for (i=0; i<rank; i++) mh_fputs("0.0\n",fp);    for (i=0; i<rank; i++) mh_fputs("0.0\n",fp);
   mh_fputs("%%Ef=\n1.0\n",fp); /* Below are dummy values */    mh_fputs("%%Ef=\n1.0\n",fp); /* Below are dummy values */
   if (h <= 0.0) {fprintf(stderr,"h<=0.0, set to 0.1\n"); h=0.1;}    if (h <= 0.0) {oxprintfe("h<=0.0, set to 0.1\n"); h=0.1;}
   mh_fputs("%%Hg=\n",fp);    mh_fputs("%%Hg=\n",fp);
   sprintf(swork,"%lf\n",h); mh_fputs(swork,fp);    sprintf(swork,"%lf\n",h); mh_fputs(swork,fp);
   if (dp < 1) {fprintf(stderr,"dp<1, set to 1\n"); dp=1;}    if (dp < 1) {oxprintfe("dp<1, set to 1\n"); dp=1;}
   mh_fputs("%%Dp=\n",fp);    mh_fputs("%%Dp=\n",fp);
   sprintf(swork,"%d\n",dp); mh_fputs(swork,fp);    sprintf(swork,"%d\n",dp); mh_fputs(swork,fp);
   if (x <= x0) {fprintf(stderr,"x <= x0, set to x=x0+10\n"); x=x0+10;}    if (x <= x0) {oxprintfe("x <= x0, set to x=x0+10\n"); x=x0+10;}
   mh_fputs("%%Xng=\n",fp);    mh_fputs("%%Xng=\n",fp);
   sprintf(swork,"%lf\n",x); mh_fputs(swork,fp);    sprintf(swork,"%lf\n",x); mh_fputs(swork,fp);
   
     sprintf(swork,"%%automatic=%d\n",automatic); mh_fputs(swork,fp);
     sprintf(swork,"%%assigned_series_error=%lg\n",assigned_series_error); mh_fputs(swork,fp);
     sprintf(swork,"%%show_autosteps=%d\n",verbose); mh_fputs(swork,fp);
   
   comm = (char *)mh_malloc(fp->len +1);    comm = (char *)mh_malloc(fp->len +1);
   mh_outstr(comm,fp->len+1,fp);    mh_outstr(comm,fp->len+1,fp);
   mh_fclose(fp);    mh_fclose(fp);
Line 75  struct cWishart *mh_cwishart_gen(int m,int n,double be
Line 85  struct cWishart *mh_cwishart_gen(int m,int n,double be
   
   rp=jk_main(6,argv);    rp=jk_main(6,argv);
   if (rp == NULL) {    if (rp == NULL) {
     fprintf(stderr,"rp is NULL.\n"); return(NULL);      oxprintfe("rp is NULL.\n"); return(NULL);
   }    }
   cw = new_cWishart(rank);    cw = new_cWishart(rank);
   cw->x = rp->x;    cw->x = rp->x;
   cw->rank = rp->rank;    cw->rank = rp->rank;
   if (rank !=  cw->rank) {    if (rank !=  cw->rank) {
     fprintf(stderr,"Rank error.\n"); return(NULL);      oxprintfe("Rank error.\n"); return(NULL);
   }    }
   for (i=0; i<cw->rank; i++) (cw->f)[i] = (rp->y)[i];    for (i=0; i<cw->rank; i++) (cw->f)[i] = (rp->y)[i];
   sfp = (rp->sfpp)[0];    sfp = (rp->sfpp)[0];
Line 93  struct cWishart *mh_cwishart_gen(int m,int n,double be
Line 103  struct cWishart *mh_cwishart_gen(int m,int n,double be
   /* todo, mh_free_??(rp);  free Iv's */    /* todo, mh_free_??(rp);  free Iv's */
   if (!modep[1]) return(cw);    if (!modep[1]) return(cw);
   
   if (MH_DEBUG) printf("\n\n%s\n",(char *)cw->aux);    if (MH_DEBUG) oxprintf("\n\n%s\n",(char *)cw->aux);
   /* This output is strange. */    /* This output is strange. */
   /* Starting HGM */    /* Starting HGM */
   argv[3] = (char *)cw->aux;    argv[3] = (char *)cw->aux;
   argv[4] = "--dataf";    argv[4] = "--dataf";
   argv[5] = "dummy-dataf";    argv[5] = "dummy-dataf";
   rp = mh_main(6,argv);    argc=6;
     if (verbose) {
       argv[6] = "--verbose"; ++argc;
     }
     rp = mh_main(argc,argv);
   if (rp == NULL) {    if (rp == NULL) {
     fprintf(stderr,"rp is NULL in the second step.\n"); return(NULL);      oxprintfe("rp is NULL in the second step.\n"); return(NULL);
   }    }
   cw = new_cWishart(rank);    cw = new_cWishart(rank);
   cw->x = rp->x;    cw->x = rp->x;
Line 125  struct cWishart *mh_cwishart_gen(int m,int n,double be
Line 139  struct cWishart *mh_cwishart_gen(int m,int n,double be
 /* Cumulative probability distribution function of the first eigenvalue of  /* Cumulative probability distribution function of the first eigenvalue of
    Wishart matrix by Series */     Wishart matrix by Series */
 struct cWishart *mh_cwishart_s(int m,int n,double beta[],double x0,  struct cWishart *mh_cwishart_s(int m,int n,double beta[],double x0,
                                int approxDeg,double h, int dp, double x) {                                 int approxDeg,double h, int dp, double x,
                                  int automatic,double assigned_series_error,
                                  int verbose)
   {
   int modep[]={1,0,0};    int modep[]={1,0,0};
   return(mh_cwishart_gen(m,n,beta,x0,approxDeg,h,dp,x,modep));    return(mh_cwishart_gen(m,n,beta,x0,approxDeg,h,dp,x,modep,automatic,assigned_series_error,verbose));
 }  }
   
 /* Cumulative probability distribution function of the first eigenvalue of  /* Cumulative probability distribution function of the first eigenvalue of
    Wishart matrix by HGM */     Wishart matrix by HGM */
 struct cWishart *mh_cwishart_hgm(int m,int n,double beta[],double x0,  struct cWishart *mh_cwishart_hgm(int m,int n,double beta[],double x0,
                                  int approxDeg, double h, int dp , double x)                                   int approxDeg, double h, int dp , double x,
                                  int automatic,double assigned_series_error,
                                  int verbose)
 {  {
   int modep[]={1,1,0};    int modep[]={1,1,0};
   return(mh_cwishart_gen(m,n,beta,x0,approxDeg,h,dp,x,modep));    return(mh_cwishart_gen(m,n,beta,x0,approxDeg,h,dp,x,modep,automatic,assigned_series_error,verbose));
 }  }
   
 #ifdef STANDALONE  #ifdef STANDALONE
 main() {  int main(int argc,char *argv[]) {
   double beta[5]={1.0,2.0,3.0,4.0,5.0};    double beta[5]={1.0,2.0,3.0,4.0,5.0};
   struct cWishart *cw;    struct cWishart *cw;
   struct SFILE *sfp;    struct SFILE *sfp;
   char *s;    char *s;
   char str[1024];    char str[1024];
   double x;    double x;
   cw=mh_cwishart_hgm(3,5,beta,0.3,7,  0.01,1,10);    int i,show;
     int strategy=1;
     double err[2]={-1.0,-1.0};
     int verbose=0;
     show=1;
     for (i=1; i<argc; i++) {
           if (strcmp(argv[i],"--strategy")==0) {
             i++; sscanf(argv[i],"%d",&strategy);
           }else if (strcmp(argv[i],"--abserr")==0) {
             i++; sscanf(argv[i],"%lg",&(err[0]));
           }else if (strcmp(argv[i],"--relerr")==0) {
             i++; sscanf(argv[i],"%lg",&(err[1]));
           }else if (strcmp(argv[i],"--quiet")==0) {
             show=0;
           }else if (strcmp(argv[i],"--verbose")==0) {
             verbose=1;
           }else{
             oxprintfe("Unknown option.\n");
           }
     }
     mh_set_strategy(strategy,err);
     cw=mh_cwishart_hgm(3,5,beta,0.3,7,  0.01,1,10, 1,1e-7,verbose);
   if (cw != NULL) {    if (cw != NULL) {
     printf("x=%lf, y=%lf\n",cw->x,(cw->f)[0]);      oxprintf("x=%lf, y=%lf\n",cw->x,(cw->f)[0]);
     /* printf("%s",(char *)cw->aux); */      /* oxprintf("%s",(char *)cw->aux); */
   }    }
   cw=mh_cwishart_hgm(4,5,beta,0.3,7,  0.01,1,10);    cw=mh_cwishart_hgm(4,5,beta,0.3,7,  0.01,1,10, 1,1e-7,verbose);
   if (cw != NULL) {    if (cw != NULL) {
     printf("x=%lf, y=%lf\n",cw->x,(cw->f)[0]);      oxprintf("x=%lf, y=%lf\n",cw->x,(cw->f)[0]);
     s = (char *)cw->aux;      s = (char *)cw->aux;
     /* printf("%s",(char *)cw->aux); */      /* oxprintf("%s",(char *)cw->aux); */
     sfp = mh_fopen(s,"r",0);      if (show) {
     while (mh_fgets(str,1024,sfp)) {        sfp = mh_fopen(s,"r",0);
       sscanf(str,"%lg",&x); printf("%lg\n",x);        while (mh_fgets(str,1024,sfp)) {
           sscanf(str,"%lg",&x); oxprintf("%lg\n",x);
         }
         mh_fclose(sfp);
     }      }
     mh_fclose(sfp);  
   }    }
     return(0);
 }  }
 main1() {  int main1() {
   double beta[5]={1.0,2.0,3.0,4.0,5.0};    double beta[5]={1.0,2.0,3.0,4.0,5.0};
   struct cWishart *cw;    struct cWishart *cw;
   cw=mh_cwishart_s(3,5,beta,0.3,7,  0,0,0);    int verbose=1;
     cw=mh_cwishart_s(3,5,beta,0.3,7,  0,0,0, 1,1e-7,verbose);
   if (cw != NULL) {    if (cw != NULL) {
     printf("%s",(char *)cw->aux);      oxprintf("%s",(char *)cw->aux);
   }    }
   cw=mh_cwishart_s(4,5,beta,0.3,7,  0,0,0);    cw=mh_cwishart_s(4,5,beta,0.3,7,  0,0,0, 1,1e-7,verbose);
   if (cw != NULL) {    if (cw != NULL) {
     printf("%s",(char *)cw->aux);      oxprintf("%s",(char *)cw->aux);
   }    }
   cw=mh_cwishart_s(5,5,beta,0.3,7,  0,0,0);    cw=mh_cwishart_s(5,5,beta,0.3,7,  0,0,0, 1,1e-7,verbose);
   if (cw != NULL) {    if (cw != NULL) {
     printf("%s",(char *)cw->aux);      oxprintf("%s",(char *)cw->aux);
   }    }
     return(0);
 }  }
 #endif  #endif
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