CVS log for OpenXM/src/hgm/mh/src/rk.c

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Default branch: MAIN

Revision 1.18 / (download) - annotate - [select for diffs], Wed Mar 2 01:09:36 2016 UTC (8 years, 3 months ago) by takayama
Branch: MAIN
CVS Tags: HEAD
Changes since 1.17: +4 -4 lines
Diff to previous 1.17 (colored)

Undo the previous commit. MH_Dp = 1 is necessary for a long step of gsl RK.

Revision 1.17 / (download) - annotate - [select for diffs], Wed Mar 2 00:27:02 2016 UTC (8 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.16: +4 -4 lines
Diff to previous 1.16 (colored)

mh_dp_orig = ... ; MH_Dp = 1; may be a code for debugging. It is removed.

Revision 1.16 / (download) - annotate - [select for diffs], Tue Mar 1 07:13:30 2016 UTC (8 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.15: +2 -1 lines
Diff to previous 1.15 (colored)

If Dp == 0, no intermediate data is stored.
If Dp < 0, Dp is automatically set.

Revision 1.15 / (download) - annotate - [select for diffs], Sat Feb 13 02:18:59 2016 UTC (8 years, 4 months ago) by takayama
Branch: MAIN
Changes since 1.14: +7 -6 lines
Diff to previous 1.14 (colored)

Both of code-n.c (for 1F1) and code-n-2f1.c (for 2F1) are included in hgm_w-n
New input data format is installed.

Revision 1.14 / (download) - annotate - [select for diffs], Tue Feb 2 03:00:08 2016 UTC (8 years, 4 months ago) by takayama
Branch: MAIN
Changes since 1.13: +2 -1 lines
Diff to previous 1.13 (colored)

Fixed bugs of code-n-2f1.c.
Testdata/test1.rr contains test codes to debug code-n-2f1.c.

Revision 1.13 / (download) - annotate - [select for diffs], Tue Mar 24 05:59:43 2015 UTC (9 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.12: +14 -14 lines
Diff to previous 1.12 (colored)

printf --> oxprintf
fprintf(stderr, --> oxprintf(

Revision 1.12 / (download) - annotate - [select for diffs], Thu Mar 20 09:37:16 2014 UTC (10 years, 3 months ago) by takayama
Branch: MAIN
CVS Tags: RELEASE_1_3_1_13b
Changes since 1.11: +2 -2 lines
Diff to previous 1.11 (colored)

relerror is automatically set for a given assigned_series_error.
See screenflow log at fe.

Revision 1.11 / (download) - annotate - [select for diffs], Fri Mar 8 04:54:01 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.10: +24 -5 lines
Diff to previous 1.10 (colored)

New options: --strategy n --abserr e1 --relerr e2
 If n==0, then the 4th Runge-Kutta is used.
If n==1, then the adaptive 4th Runge-Kutta is used where e1 is the absolute error and e2 is the relative error
to control the step size.

Revision 1.10 / (download) - annotate - [select for diffs], Thu Mar 7 11:12:13 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.9: +9 -4 lines
Diff to previous 1.9 (colored)

Adjusting parameters abs error and rel errors.
I have not yet found the optimal value nor optimal strategy #ticket-2013-03-07-a#.

Revision 1.9 / (download) - annotate - [select for diffs], Thu Mar 7 07:02:18 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.8: +61 -1 lines
Diff to previous 1.8 (colored)

The gls adaptive Runge-Kutta is used (cf. NO_GSL).
Relative error bound should be used.

Revision 1.8 / (download) - annotate - [select for diffs], Thu Mar 7 05:23:31 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.7: +2 -1 lines
Diff to previous 1.7 (colored)

Minor changes to remove warnings by the option -std=gnu99.

Revision 1.7 / (download) - annotate - [select for diffs], Thu Mar 7 03:00:43 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.6: +50 -50 lines
Diff to previous 1.6 (colored)

Cosmetic changes: indent-region and untabify.

Revision 1.6 / (download) - annotate - [select for diffs], Fri Mar 1 05:26:25 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.5: +3 -3 lines
Diff to previous 1.5 (colored)

static function_name --> static int function_name.

Revision 1.5 / (download) - annotate - [select for diffs], Sat Feb 23 06:01:15 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.4: +2 -2 lines
Diff to previous 1.4 (colored)

mh_cwishart_hgm() evaluates the cumulative distribution function
of the first eigenvalue of wishart matrix by Koev-Edelman alg
and HGM.
See main and main1 in mh.c as an example of the usage.

Revision 1.4 / (download) - annotate - [select for diffs], Wed Feb 20 05:20:49 2013 UTC (11 years, 4 months ago) by takayama
Branch: MAIN
Changes since 1.3: +36 -20 lines
Diff to previous 1.3 (colored)

It accepts the --bystring mode. In which, input and results are stored
in strings.

Revision 1.3 / (download) - annotate - [select for diffs], Wed Feb 20 01:06:38 2013 UTC (11 years, 4 months ago) by takayama
Branch: MAIN
Changes since 1.2: +15 -2 lines
Diff to previous 1.2 (colored)

Added a function mh_freeWorkArea(), which deallocates all the allocated memory.
It should be called in the non-standalone mode after finishing the computation.

Revision 1.2 / (download) - annotate - [select for diffs], Tue Feb 19 08:03:14 2013 UTC (11 years, 4 months ago) by takayama
Branch: MAIN
Changes since 1.1: +36 -35 lines
Diff to previous 1.1 (colored)

Intermediate commit of the work of today. Porting is still in progress.

Revision 1.1 / (download) - annotate - [select for diffs], Tue Feb 19 03:06:19 2013 UTC (11 years, 4 months ago) by takayama
Branch: MAIN

Preliminary codes and test data of the porting of OpenXM/Math/1F1/hgd-1F1.tar.gz.

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