version 1.2, 2013/02/19 08:03:14 |
version 1.17, 2014/03/12 07:50:37 |
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/* |
/* |
$OpenXM$ |
$OpenXM: OpenXM/src/hgm/mh/src/wmain.c,v 1.16 2014/03/11 05:20:45 takayama Exp $ |
License: LGPL |
License: LGPL |
*/ |
*/ |
#include <stdio.h> |
#include <stdio.h> |
#include <stdlib.h> |
#include <stdlib.h> |
#include <math.h> |
#include <math.h> |
#include <string.h> |
#include <string.h> |
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#include "sfile.h" |
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#include "mh.h" |
#define SMAX 4096 |
#define SMAX 4096 |
#define inci(i) { i++; if (i >= argc) { fprintf(stderr,"Option argument is not given.\n"); return(-1); }} |
#define inci(i) { i++; if (i >= argc) { fprintf(stderr,"Option argument is not given.\n"); return(NULL); }} |
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int MH_deallocate=0; |
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extern char *MH_Gfname; |
extern char *MH_Gfname; |
extern char *MH_Dfname; |
extern char *MH_Dfname; |
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/* global variables. They are set in setParam() */ |
/* global variables. They are set in setParam() */ |
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int MH_byFile=1; |
int MH_RANK; |
int MH_RANK; |
int MH_M; |
int MH_M; |
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Line 28 int MH_RawName = 0; |
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Line 33 int MH_RawName = 0; |
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static int Testrank=0; |
static int Testrank=0; |
extern int MH_Verbose; |
extern int MH_Verbose; |
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extern int MH_P95; /* 95 % points */ |
extern int MH_P95; /* 95 % points */ |
int mh_gopen_file(void); |
int mh_gopen_file(void); |
double mh_rkmain(double x0,double y0[],double xn); |
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static int setParamTest(void); |
static int setParamTest(void); |
static int setParamDefault(void); |
static int setParamDefault(void); |
static int setParam(char *fname); |
static int setParam(char *fname); |
static int showParam(void); |
static int showParam(void); |
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static int next(struct SFILE *fp,char *s, char *msg); |
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/* #define DEBUG */ |
/* #define DEBUG */ |
#ifdef DEBUG |
#ifdef DEBUG |
char *MH_Dfname; char *MH_Gfname; double MH_Hg; |
char *MH_Dfname; char *MH_Gfname; double MH_Hg; |
int mh_gopen_file(void) { } |
int mh_gopen_file(void) { } |
double mh_rkmain(double x0,double y0[],double xn) { } |
struct MH_RESULT mh_rkmain(double x0,double y0[],double xn) { } |
#endif |
#endif |
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void *mh_malloc(int s) { |
void mh_freeWorkArea(void) { |
void *p; |
extern int MH_deallocate; |
p = (void*)malloc(s); |
MH_deallocate=1; /* switch to deallocation mode. */ |
if (p == NULL) { |
mh_main(0,NULL); |
fprintf(stderr,"No memory.\n"); mh_exit(-1); |
setParam(NULL); |
} |
mh_rkmain(0.0, NULL, 0.0); |
return(p); |
mh_rf(0.0, NULL, 0, NULL, 0); |
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MH_deallocate=0; /* switch to the normal mode. */ |
} |
} |
mh_free(void *p) { |
static int mypower(int x,int n) { |
free(p); |
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return(0); |
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} |
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static mypower(int x,int n) { |
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int a,i; |
int a,i; |
a = 1; |
a = 1; |
for (i=0; i<n; i++) a = a*x; |
for (i=0; i<n; i++) a = a*x; |
return(a); |
return(a); |
} |
} |
#ifdef STANDALONE |
#ifdef STANDALONE2 |
main(int argc,char *argv[]) { |
main(int argc,char *argv[]) { |
return mh_main(argc,char *argv[]); |
int strategy=STRATEGY_DEFAULT; |
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double err[2]={-1.0,-1.0}; |
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int i; |
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for (i=1; i<argc; i++) { |
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if (strcmp(argv[i],"--strategy")==0) { |
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i++; sscanf(argv[i],"%d",&strategy); |
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}else if (strcmp(argv[i],"--abserr")==0) { |
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i++; sscanf(argv[i],"%lg",&(err[0])); |
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}else if (strcmp(argv[i],"--relerr")==0) { |
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i++; sscanf(argv[i],"%lg",&(err[1])); |
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}else ; |
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} |
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mh_set_strategy(strategy,err); |
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mh_exit(MH_RESET_EXIT); /* standalone mode */ |
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/* mh_main(argc,argv); |
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mh_freeWorkArea(); */ |
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mh_main(argc,argv); |
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/* showParam(); */ |
} |
} |
#endif |
#endif |
mh_main(int argc,char *argv[]) { |
struct MH_RESULT *mh_main(int argc,char *argv[]) { |
double *y0; |
static double *y0=NULL; |
double x0,xn; |
double x0,xn; |
double ef; |
double ef; |
int i,rank; |
int i,rank; |
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struct MH_RESULT *rp=NULL; |
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extern int MH_deallocate; |
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extern int MH_byFile; |
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MH_byFile=1; |
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if (MH_deallocate) { if (y0) mh_free(y0); return(rp); } |
setParam(NULL); MH_Gfname = MH_Dfname = NULL; MH_Verbose=1; |
setParam(NULL); MH_Gfname = MH_Dfname = NULL; MH_Verbose=1; |
for (i=1; i<argc; i++) { |
for (i=1; i<argc; i++) { |
if (strcmp(argv[i],"--idata")==0) { |
if (strcmp(argv[i],"--idata")==0) { |
inci(i); |
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setParam(argv[i]); MH_Verbose=0; |
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}else if (strcmp(argv[i],"--gnuplotf")==0) { |
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inci(i); |
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MH_Gfname = (char *)mh_malloc(SMAX); |
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strncpy(MH_Gfname,argv[i],SMAX-1); |
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}else if (strcmp(argv[i],"--dataf")==0) { |
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inci(i); |
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MH_Dfname = (char *)mh_malloc(SMAX); |
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strncpy(MH_Dfname,argv[i],SMAX-1); |
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}else if (strcmp(argv[i],"--xmax")==0) { |
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inci(i); |
inci(i); |
sscanf(argv[i],"%lf",&Xng); |
setParam(argv[i]); MH_Verbose=0; |
}else if (strcmp(argv[i],"--step")==0) { |
}else if (strcmp(argv[i],"--gnuplotf")==0) { |
inci(i); |
inci(i); |
sscanf(argv[i],"%lg",&MH_Hg); |
MH_Gfname = (char *)mh_malloc(SMAX); |
}else if (strcmp(argv[i],"--help")==0) { |
strcpy(MH_Gfname,argv[i]); |
mh_usage(); return(0); |
}else if (strcmp(argv[i],"--dataf")==0) { |
}else if (strcmp(argv[i],"--raw")==0) { |
inci(i); |
MH_RawName = 1; |
MH_Dfname = (char *)mh_malloc(SMAX); |
}else if (strcmp(argv[i],"--test")==0) { |
strcpy(MH_Dfname,argv[i]); |
inci(i); |
}else if (strcmp(argv[i],"--xmax")==0) { |
sscanf(argv[i],"%d",&Testrank); |
inci(i); |
setParamTest(); |
sscanf(argv[i],"%lf",&Xng); |
}else if (strcmp(argv[i],"--95")==0) { |
}else if (strcmp(argv[i],"--step")==0) { |
MH_P95=1; |
inci(i); |
}else if (strcmp(argv[i],"--verbose")==0) { |
sscanf(argv[i],"%lg",&MH_Hg); |
MH_Verbose=1; |
}else if (strcmp(argv[i],"--help")==0) { |
}else { |
mh_usage(); return(rp); |
fprintf(stderr,"Unknown option %s\n",argv[i]); |
}else if (strcmp(argv[i],"--raw")==0) { |
mh_usage(); |
MH_RawName = 1; |
return(-1); |
}else if (strcmp(argv[i],"--test")==0) { |
} |
inci(i); |
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sscanf(argv[i],"%d",&Testrank); |
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setParamTest(); |
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}else if (strcmp(argv[i],"--95")==0) { |
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MH_P95=1; |
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}else if (strcmp(argv[i],"--verbose")==0) { |
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MH_Verbose=1; |
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}else if (strcmp(argv[i],"--bystring")==0) { |
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MH_byFile = 0; |
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}else if (strcmp(argv[i],"--strategy")==0) { |
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i++; /* ignore */ |
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}else if (strcmp(argv[i],"--abserr")==0) { |
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i++; /* ignore */ |
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}else if (strcmp(argv[i],"--relerr")==0) { |
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i++; /* ignore */ |
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}else { |
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fprintf(stderr,"Unknown option %s\n",argv[i]); |
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mh_usage(); |
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return(rp); |
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} |
} |
} |
if (MH_Verbose) showParam(); |
if (MH_Verbose) showParam(); |
x0 = MH_X0g; |
x0 = MH_X0g; |
Line 117 mh_main(int argc,char *argv[]) { |
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Line 150 mh_main(int argc,char *argv[]) { |
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for (i=0; i<rank; i++) y0[i] = ef*Iv[i]; |
for (i=0; i<rank; i++) y0[i] = ef*Iv[i]; |
mh_gopen_file(); |
mh_gopen_file(); |
if (MH_Verbose) {for (i=0; i<rank; i++) printf("%lf\n",y0[i]); } |
if (MH_Verbose) {for (i=0; i<rank; i++) printf("%lf\n",y0[i]); } |
mh_rkmain(x0,y0,xn); |
rp = (struct MH_RESULT*) mh_malloc(sizeof(struct MH_RESULT)); |
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rp->message = NULL; |
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*rp=mh_rkmain(x0,y0,xn); |
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return(rp); |
} |
} |
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mh_usage() { |
int mh_usage() { |
fprintf(stderr,"Usages:\n"); |
fprintf(stderr,"Usages:\n"); |
fprintf(stderr,"w-m [--idata input_data_file --gnuplotf gnuplot_file_name\n"); |
fprintf(stderr,"hgm_w-n [--idata input_data_file --gnuplotf gnuplot_file_name\n"); |
fprintf(stderr," --dataf output_data_file --raw --xmax xmax --test m --step h]\n"); |
fprintf(stderr," --dataf output_data_file --raw --xmax xmax --test m --step h]\n"); |
fprintf(stderr,"[ --95 --verbose] \n"); |
fprintf(stderr,"[ --95 --verbose] \n"); |
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fprintf(stderr,"[ --strategy s --abserr ae --relerr re] \n"); |
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fprintf(stderr,"s:0 rk, s:1 adaptive, s:2 adaptive&multiply, see rk.c for the default value of ae and re.\n"); |
fprintf(stderr,"--raw does not add data parameters to the output_data_file.\n"); |
fprintf(stderr,"--raw does not add data parameters to the output_data_file.\n"); |
fprintf(stderr,"\nThe command w-m [options] evaluates Pr({y | y<xmax}), which is the cumulative distribution function of the largest root of the m by m Wishart matrix with n degrees of freedom and the covariantce matrix sigma.\n"); |
fprintf(stderr,"\nThe command hgm_w-n [options] evaluates Pr({y | y<xmax}), which is the cumulative distribution function of the largest root of the m by m Wishart matrix with n degrees of freedom and the covariantce matrix sigma.\n"); |
fprintf(stderr,"All the eigenvalues of sigma must be simple.\n"); |
fprintf(stderr,"All the eigenvalues of sigma must be simple.\n"); |
fprintf(stderr,"Parameters are specified by the input_data_file.\n"); |
fprintf(stderr,"Parameters are specified by the input_data_file.\n"); |
fprintf(stderr,"The format of the input_data_file.\n"); |
fprintf(stderr,"The format of the input_data_file, which should be generated by the command hgm_jack-n.\n"); |
fprintf(stderr," MH_Mg: m, MH_Beta: beta=sigma^(-1)/2 (diagonized), MH_Ng: n, Iv: initial values at MH_X0g*MH_Beta (see our paper how to order them), \n"); |
fprintf(stderr," MH_Mg: m, MH_Beta: beta=sigma^(-1)/2 (diagonized), MH_Ng: n, MH_X0g: starting value of x,\n"); |
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fprintf(stderr," Iv: initial values at MH_X0g*MH_Beta (see our paper how to order them), \n"); |
fprintf(stderr," Ef: a scalar factor to the initial value. It may set to 1.\n"); |
fprintf(stderr," Ef: a scalar factor to the initial value. It may set to 1.\n"); |
fprintf(stderr," MH_Hg: h (step size), MH_X0g: starting value of x, Xng: terminating value of x\n"); |
fprintf(stderr," MH_Hg: h (step size),\n"); |
fprintf(stderr," MH_Dp: output data is stored in every MH_Dp steps when output_data_file is specified.\n"); |
fprintf(stderr," MH_Dp: output data is stored in every MH_Dp steps when output_data_file is specified.\n"); |
fprintf(stderr," --95: output the 95% point. --verbose: verbose mode.\n"); |
fprintf(stderr," Xng: terminating value of x.\n"); |
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fprintf(stderr," --95: output the 95%% point. --verbose: verbose mode.\n"); |
fprintf(stderr," The line started with %% is a comment line.\n"); |
fprintf(stderr," The line started with %% is a comment line.\n"); |
fprintf(stderr," An example format of the input_data_file can be obtained by executing w-2 with no option.\n"); |
fprintf(stderr," An example format of the input_data_file can be obtained by executing hgm_jack-n with no option.\n"); |
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fprintf(stderr,"When --idata option is used, this command is quiet. Use --verbose option if you want to see some messages.\n"); |
fprintf(stderr,"\nExamples:\n"); |
fprintf(stderr,"\nExamples:\n"); |
fprintf(stderr,"[1] ./w-2 \n"); |
fprintf(stderr,"[1] ./hgm_w-n \n"); |
fprintf(stderr,"[2] ./w-2 --xmax 20\n"); |
fprintf(stderr,"[2] ./hgm_w-n --xmax 20\n"); |
fprintf(stderr,"[3] ./w-6 --test 6\n"); |
fprintf(stderr,"[3] ./hgm_w-n --test 6\n"); |
fprintf(stderr," A test run of w-6.\n"); |
fprintf(stderr," A test run in Mg=6.\n"); |
fprintf(stderr," The number m and mm must agree for ./w-m --test mm.\n"); |
fprintf(stderr,"[4] ./hgm_jack-n --idata Testdata/tmp-idata3.txt --degree 15 >t.txt\n"); |
fprintf(stderr,"[4] ./w-5 --idata tmp-inm-m5* --gnuplot tmp-graph\n"); |
fprintf(stderr," ./hgm_w-n --idata t.txt --gnuplotf test-g\n"); |
fprintf(stderr," tmp-inm-m5* is a sample input data distributed with this file.\n"); |
fprintf(stderr," gnuplot -persist <test-g-gp.txt\n"); |
fprintf(stderr," tmp-graph-gp.txt is an input file of the gnuplot\n"); |
fprintf(stderr," tmp-idata3.txt is a sample input data distributed with this file.\n"); |
fprintf(stderr," It can be executed with the load command in the gnuplot.\n"); |
fprintf(stderr," test-g-gp.txt is an input file of the gnuplot\n"); |
fprintf(stderr," tmp-graph is the table of x and the values of Pr({y | y<x}).\n"); |
fprintf(stderr," test-g is the table of x and the values of Pr({y | y<x}).\n"); |
} |
} |
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static setParamTest() { |
static int setParamTest() { |
int rank; |
int rank; |
int i; |
int i; |
extern int Testrank; |
extern int Testrank; |
Line 170 static setParamTest() { |
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Line 211 static setParamTest() { |
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MH_Dp = 1; |
MH_Dp = 1; |
Xng = 10.0; |
Xng = 10.0; |
} |
} |
static setParamDefault() { |
static int setParamDefault() { |
int rank; |
int rank; |
MH_M=MH_Mg = 2 ; |
MH_M=MH_Mg = 2 ; |
MH_RANK=rank = mypower(2,MH_Mg); |
MH_RANK=rank = mypower(2,MH_Mg); |
Line 189 static setParamDefault() { |
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Line 230 static setParamDefault() { |
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Xng = 10.0; |
Xng = 10.0; |
} |
} |
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next(FILE *fp,char *s,char *msg) { |
static int next(struct SFILE *sfp,char *s,char *msg) { |
s[0] = '%'; |
s[0] = '%'; |
while (s[0] == '%') { |
while (s[0] == '%') { |
if (!fgets(s,SMAX,fp)) { |
if (!mh_fgets(s,SMAX,sfp)) { |
fprintf(stderr,"Data format error at %s\n",msg); |
fprintf(stderr,"Data format error at %s\n",msg); |
mh_exit(-1); |
mh_exit(-1); |
} |
} |
if (s[0] != '%') return(0); |
if (s[0] != '%') return(0); |
} |
} |
} |
} |
static setParam(char *fname) { |
static int setParam(char *fname) { |
int rank; |
int rank; |
char s[SMAX]; |
char s[SMAX]; |
FILE *fp; |
struct SFILE *fp; |
int i; |
int i; |
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extern int MH_deallocate; |
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extern int MH_byFile; |
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if (MH_deallocate) { |
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if (MH_Beta) mh_free(MH_Beta); |
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if (MH_Ng) mh_free(MH_Ng); |
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if (Iv) mh_free(Iv); |
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return(0); |
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} |
if (fname == NULL) return(setParamDefault()); |
if (fname == NULL) return(setParamDefault()); |
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if ((fp=fopen(fname,"r")) == NULL) { |
if ((fp=mh_fopen(fname,"r",MH_byFile)) == NULL) { |
fprintf(stderr,"File %s is not found.\n",fname); |
fprintf(stderr,"File %s is not found.\n",fname); |
mh_exit(-1); |
mh_exit(-1); |
} |
} |
next(fp,s,"MH_Mg(m)"); |
next(fp,s,"MH_Mg(m)"); |
sscanf(s,"%d",&MH_Mg); MH_M=MH_Mg; |
sscanf(s,"%d",&MH_Mg); MH_M=MH_Mg; |
Line 217 static setParam(char *fname) { |
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Line 266 static setParam(char *fname) { |
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MH_Beta = (double *)mh_malloc(sizeof(double)*MH_Mg); |
MH_Beta = (double *)mh_malloc(sizeof(double)*MH_Mg); |
for (i=0; i<MH_Mg; i++) { |
for (i=0; i<MH_Mg; i++) { |
next(fp,s,"MH_Beta"); |
next(fp,s,"MH_Beta"); |
sscanf(s,"%lf",&(MH_Beta[i])); |
sscanf(s,"%lf",&(MH_Beta[i])); |
} |
} |
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MH_Ng = (double *)mh_malloc(sizeof(double)); |
MH_Ng = (double *)mh_malloc(sizeof(double)); |
Line 229 static setParam(char *fname) { |
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Line 278 static setParam(char *fname) { |
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Iv = (double *)mh_malloc(sizeof(double)*rank); |
Iv = (double *)mh_malloc(sizeof(double)*rank); |
for (i=0; i<rank; i++) { |
for (i=0; i<rank; i++) { |
next(fp,s,"Iv(initial values)"); |
next(fp,s,"Iv(initial values)"); |
sscanf(s,"%lg",&(Iv[i])); |
sscanf(s,"%lg",&(Iv[i])); |
} |
} |
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next(fp,s,"Ef(exponential factor)"); |
next(fp,s,"Ef(exponential factor)"); |
Line 244 static setParam(char *fname) { |
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Line 293 static setParam(char *fname) { |
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next(fp,s,"Xng (the last point, cf. --xmax)"); |
next(fp,s,"Xng (the last point, cf. --xmax)"); |
sscanf(s,"%lf",&Xng); |
sscanf(s,"%lf",&Xng); |
fclose(fp); |
mh_fclose(fp); |
} |
} |
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showParam() { |
int showParam() { |
int rank,i; |
int rank,i; |
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extern int MH_strategy; |
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extern double MH_abserr; |
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extern double MH_relerr; |
rank = mypower(2,MH_Mg); |
rank = mypower(2,MH_Mg); |
printf("%%MH_Mg=\n%d\n",MH_Mg); |
printf("%%MH_Mg=\n%d\n",MH_Mg); |
for (i=0; i<MH_Mg; i++) { |
for (i=0; i<MH_Mg; i++) { |
printf("%%MH_Beta[%d]=\n%lf\n",i,MH_Beta[i]); |
printf("%%MH_Beta[%d]=\n%lf\n",i,MH_Beta[i]); |
} |
} |
printf("%%MH_Ng=\n%lf\n",*MH_Ng); |
printf("%%MH_Ng=\n%lf\n",*MH_Ng); |
printf("%%MH_X0g=\n%lf\n",MH_X0g); |
printf("%%MH_X0g=\n%lf\n",MH_X0g); |
for (i=0; i<rank; i++) { |
for (i=0; i<rank; i++) { |
printf("%%Iv[%d]=\n%lg\n",i,Iv[i]); |
printf("%%Iv[%d]=\n%lg\n",i,Iv[i]); |
} |
} |
printf("%%Ef=\n%lf\n",Ef); |
printf("%%Ef=\n%lf\n",Ef); |
printf("%%MH_Hg=\n%lf\n",MH_Hg); |
printf("%%MH_Hg=\n%lf\n",MH_Hg); |
printf("%%MH_Dp=\n%d\n",MH_Dp); |
printf("%%MH_Dp=\n%d\n",MH_Dp); |
printf("%%Xng=\n%lf\n",Xng); |
printf("%%Xng=\n%lf\n",Xng); |
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printf("%%strategy=%d\n",MH_strategy); |
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printf("%%abserr=%lg, relerr=%lg\n",MH_abserr,MH_relerr); |
} |
} |
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mh_exit(int n) { |
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#ifdef STANDALONE |
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exit(n); |
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#else |
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fprintf(stderr,"Fatal error mh_exit(%d) in mh-w-n.\n",n); |
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#endif |
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} |
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