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CVS log for OpenXM/src/hgm/mh/src/wmain.c

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Revision 1.37 / (download) - annotate - [select for diffs], Thu Feb 6 23:58:02 2020 UTC (4 years, 4 months ago) by takayama
Branch: MAIN
CVS Tags: HEAD
Changes since 1.36: +2 -2 lines
Diff to previous 1.36 (colored)

Some initialization to remove warning of gcc9.

Revision 1.36 / (download) - annotate - [select for diffs], Mon Jun 6 04:49:11 2016 UTC (8 years ago) by takayama
Branch: MAIN
Changes since 1.35: +2 -2 lines
Diff to previous 1.35 (colored)

Improved the advice on the value of the absolute error.

Revision 1.35 / (download) - annotate - [select for diffs], Sat Jun 4 07:52:14 2016 UTC (8 years ago) by takayama
Branch: MAIN
Changes since 1.34: +2 -2 lines
Diff to previous 1.34 (colored)

When isnan(F) is 1, then it stops.
Some warning messages presents some advaices on parameter setting.

Revision 1.34 / (download) - annotate - [select for diffs], Wed Mar 2 00:27:02 2016 UTC (8 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.33: +4 -1 lines
Diff to previous 1.33 (colored)

mh_dp_orig = ... ; MH_Dp = 1; may be a code for debugging. It is removed.

Revision 1.33 / (download) - annotate - [select for diffs], Tue Mar 1 07:13:30 2016 UTC (8 years, 3 months ago) by takayama
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Changes since 1.32: +4 -3 lines
Diff to previous 1.32 (colored)

If Dp == 0, no intermediate data is stored.
If Dp < 0, Dp is automatically set.

Revision 1.32 / (download) - annotate - [select for diffs], Tue Feb 16 02:17:00 2016 UTC (8 years, 4 months ago) by takayama
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Changes since 1.31: +2 -2 lines
Diff to previous 1.31 (colored)

Updated documents, which explain how to set abserr, ...

Revision 1.31 / (download) - annotate - [select for diffs], Sat Feb 13 22:56:50 2016 UTC (8 years, 4 months ago) by takayama
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Changes since 1.30: +5 -3 lines
Diff to previous 1.30 (colored)

Fixed typos.
autoplot=1 sets dp automatically.

Revision 1.30 / (download) - annotate - [select for diffs], Sat Feb 13 05:55:09 2016 UTC (8 years, 4 months ago) by takayama
Branch: MAIN
Changes since 1.29: +11 -5 lines
Diff to previous 1.29 (colored)

Added R interface functions.
./mh --testnew is for testing these functions.

Revision 1.29 / (download) - annotate - [select for diffs], Sat Feb 13 02:34:20 2016 UTC (8 years, 4 months ago) by takayama
Branch: MAIN
Changes since 1.28: +2 -1 lines
Diff to previous 1.28 (colored)

Removed some warnings. No tag in auto-generated .h files.

Revision 1.28 / (download) - annotate - [select for diffs], Sat Feb 13 02:19:00 2016 UTC (8 years, 4 months ago) by takayama
Branch: MAIN
Changes since 1.27: +255 -66 lines
Diff to previous 1.27 (colored)

Both of code-n.c (for 1F1) and code-n-2f1.c (for 2F1) are included in hgm_w-n
New input data format is installed.

Revision 1.27 / (download) - annotate - [select for diffs], Thu Feb 4 06:56:05 2016 UTC (8 years, 4 months ago) by takayama
Branch: MAIN
Changes since 1.26: +15 -1 lines
Diff to previous 1.26 (colored)

The test code gen5() in Testdata/test1.rr for 2F1 seems to work.
Diagonal shift by the strategy Ef_type=2 is introduced.

Revision 1.26 / (download) - annotate - [select for diffs], Mon Feb 1 11:37:14 2016 UTC (8 years, 4 months ago) by takayama
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Changes since 1.25: +79 -3 lines
Diff to previous 1.25 (colored)

hgm_w-n-2f1 is still under developement.

Revision 1.25 / (download) - annotate - [select for diffs], Thu Apr 2 01:31:18 2015 UTC (9 years, 2 months ago) by takayama
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Changes since 1.24: +2 -2 lines
Diff to previous 1.24 (colored)

Changed the warning message.

Revision 1.24 / (download) - annotate - [select for diffs], Thu Apr 2 01:11:13 2015 UTC (9 years, 2 months ago) by takayama
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Changes since 1.23: +2 -2 lines
Diff to previous 1.23 (colored)

Errorneous use of 2^I is corrected.
Debugging functions are defined only when STANDALONE is defined.

Revision 1.23 / (download) - annotate - [select for diffs], Tue Mar 24 07:49:06 2015 UTC (9 years, 2 months ago) by takayama
Branch: MAIN
Changes since 1.22: +7 -7 lines
Diff to previous 1.22 (colored)

Cosmetic changes for the submission to cran. It has not yet been completed...

Revision 1.22 / (download) - annotate - [select for diffs], Tue Mar 24 05:59:43 2015 UTC (9 years, 2 months ago) by takayama
Branch: MAIN
Changes since 1.21: +63 -63 lines
Diff to previous 1.21 (colored)

printf --> oxprintf
fprintf(stderr, --> oxprintf(

Revision 1.21 / (download) - annotate - [select for diffs], Thu Mar 20 10:58:37 2014 UTC (10 years, 2 months ago) by takayama
Branch: MAIN
CVS Tags: RELEASE_1_3_1_13b
Changes since 1.20: +6 -6 lines
Diff to previous 1.20 (colored)

Updated the usages.

Revision 1.20 / (download) - annotate - [select for diffs], Sat Mar 15 00:43:47 2014 UTC (10 years, 3 months ago) by takayama
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Changes since 1.19: +113 -27 lines
Diff to previous 1.19 (colored)

A parser of idata is added.
strategy=1 is the default.
x0value_min is changed to 1e-30.
Output several diagnostic data (estimated step size, ...)

Revision 1.19 / (download) - annotate - [select for diffs], Fri Mar 14 05:58:16 2014 UTC (10 years, 3 months ago) by takayama
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Changes since 1.18: +5 -1 lines
Diff to previous 1.18 (colored)

A parser is added to --idata.
%% or # is a comment.
, or space are delimiter.
%name is the variable id.
See TestData/tmp-idata2.txt as to examples.

Revision 1.18 / (download) - annotate - [select for diffs], Fri Mar 14 02:21:40 2014 UTC (10 years, 3 months ago) by takayama
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Changes since 1.17: +2 -1 lines
Diff to previous 1.17 (colored)

mh_parse for parsing input files is added.
See main() in sfile.c.
In order to executing a demo, make test3 and ./test3

Revision 1.17 / (download) - annotate - [select for diffs], Wed Mar 12 07:50:37 2014 UTC (10 years, 3 months ago) by takayama
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Changes since 1.16: +3 -1 lines
Diff to previous 1.16 (colored)

Threshold of error is changed. Added a usage of --strategy option.

Revision 1.16 / (download) - annotate - [select for diffs], Tue Mar 11 05:20:45 2014 UTC (10 years, 3 months ago) by takayama
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Changes since 1.15: +3 -1 lines
Diff to previous 1.15 (colored)

hgm_jack-n accepts the option --automatic 1.
This mode looks for acceptable values for --degree and --x0
with heuristics.  See mh_t in jack-n.c.

Revision 1.15 / (download) - annotate - [select for diffs], Mon Mar 10 04:38:23 2014 UTC (10 years, 3 months ago) by takayama
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Changes since 1.14: +3 -2 lines
Diff to previous 1.14 (colored)

Added a comment on --idata option.

Revision 1.14 / (download) - annotate - [select for diffs], Tue Feb 25 05:25:39 2014 UTC (10 years, 3 months ago) by takayama
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Changes since 1.13: +18 -16 lines
Diff to previous 1.13 (colored)

Updates of usages.

Revision 1.13 / (download) - annotate - [select for diffs], Fri Mar 8 07:32:28 2013 UTC (11 years, 3 months ago) by takayama
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Changes since 1.12: +2 -2 lines
Diff to previous 1.12 (colored)

Fixed typos of the manual.
The #ticket-2013-03-07-a# is settled by the options method, err.

Revision 1.12 / (download) - annotate - [select for diffs], Fri Mar 8 04:54:01 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.11: +26 -1 lines
Diff to previous 1.11 (colored)

New options: --strategy n --abserr e1 --relerr e2
 If n==0, then the 4th Runge-Kutta is used.
If n==1, then the adaptive 4th Runge-Kutta is used where e1 is the absolute error and e2 is the relative error
to control the step size.

Revision 1.11 / (download) - annotate - [select for diffs], Thu Mar 7 05:23:31 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.10: +2 -1 lines
Diff to previous 1.10 (colored)

Minor changes to remove warnings by the option -std=gnu99.

Revision 1.10 / (download) - annotate - [select for diffs], Thu Mar 7 03:00:43 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.9: +55 -55 lines
Diff to previous 1.9 (colored)

Cosmetic changes: indent-region and untabify.

Revision 1.9 / (download) - annotate - [select for diffs], Tue Mar 5 05:26:07 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.8: +2 -2 lines
Diff to previous 1.8 (colored)

Calling R_CheckUserInterrupt to catch the "stop" signal in R.

Revision 1.8 / (download) - annotate - [select for diffs], Fri Mar 1 05:26:25 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.7: +8 -8 lines
Diff to previous 1.7 (colored)

static function_name --> static int function_name.

Revision 1.7 / (download) - annotate - [select for diffs], Sat Feb 23 06:01:15 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.6: +2 -2 lines
Diff to previous 1.6 (colored)

mh_cwishart_hgm() evaluates the cumulative distribution function
of the first eigenvalue of wishart matrix by Koev-Edelman alg
and HGM.
See main and main1 in mh.c as an example of the usage.

Revision 1.6 / (download) - annotate - [select for diffs], Thu Feb 21 07:30:56 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.5: +4 -3 lines
Diff to previous 1.5 (colored)

1. JK_byFile is introduced.
2. jk_freeWorkArea() and jk_initialzeWorkArea().
3. The --bystring option is implemented.
4. Repeated use of jk_main outputs wrong answers. Try ./test2 Testdata/tmp-idata3.txt
   This bug has not been fixed. (#ticket 2013-02-21-a#)
5. A bug of mh_fputs is fixed.

Revision 1.5 / (download) - annotate - [select for diffs], Wed Feb 20 05:56:16 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.4: +2 -21 lines
Diff to previous 1.4 (colored)

mh_exit(0x7fffffff) changes the mode of this function to the standalone mode.
Initial version of jack-n.c of evaluating the matrix hypergeometric function
by Koev-Edelman's algorithm.

Revision 1.4 / (download) - annotate - [select for diffs], Wed Feb 20 05:20:49 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.3: +27 -18 lines
Diff to previous 1.3 (colored)

It accepts the --bystring mode. In which, input and results are stored
in strings.

Revision 1.3 / (download) - annotate - [select for diffs], Wed Feb 20 01:06:38 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.2: +26 -3 lines
Diff to previous 1.2 (colored)

Added a function mh_freeWorkArea(), which deallocates all the allocated memory.
It should be called in the non-standalone mode after finishing the computation.

Revision 1.2 / (download) - annotate - [select for diffs], Tue Feb 19 08:03:14 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN
Changes since 1.1: +94 -76 lines
Diff to previous 1.1 (colored)

Intermediate commit of the work of today. Porting is still in progress.

Revision 1.1 / (download) - annotate - [select for diffs], Tue Feb 19 03:06:19 2013 UTC (11 years, 3 months ago) by takayama
Branch: MAIN

Preliminary codes and test data of the porting of OpenXM/Math/1F1/hgd-1F1.tar.gz.

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