===================================================================
RCS file: /home/cvs/OpenXM_contrib2/asir2000/io/Makefile.in,v
retrieving revision 1.12
retrieving revision 1.17
diff -u -p -r1.12 -r1.17
--- OpenXM_contrib2/asir2000/io/Makefile.in	2007/11/11 08:44:13	1.12
+++ OpenXM_contrib2/asir2000/io/Makefile.in	2013/12/20 02:02:24	1.17
@@ -1,8 +1,9 @@
-# Makefile.in generated by automake 1.10 from Makefile.am.
+# Makefile.in generated by automake 1.11.6 from Makefile.am.
 # @configure_input@
 
 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006  Free Software Foundation, Inc.
+# 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011 Free Software
+# Foundation, Inc.
 # This Makefile.in is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
@@ -15,9 +16,27 @@
 @SET_MAKE@
 
 VPATH = @srcdir@
+am__make_dryrun = \
+  { \
+    am__dry=no; \
+    case $$MAKEFLAGS in \
+      *\\[\ \	]*) \
+        echo 'am--echo: ; @echo "AM"  OK' | $(MAKE) -f - 2>/dev/null \
+          | grep '^AM OK$$' >/dev/null || am__dry=yes;; \
+      *) \
+        for am__flg in $$MAKEFLAGS; do \
+          case $$am__flg in \
+            *=*|--*) ;; \
+            *n*) am__dry=yes; break;; \
+          esac; \
+        done;; \
+    esac; \
+    test $$am__dry = yes; \
+  }
 pkgdatadir = $(datadir)/@PACKAGE@
-pkglibdir = $(libdir)/@PACKAGE@
 pkgincludedir = $(includedir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkglibexecdir = $(libexecdir)/@PACKAGE@
 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
 install_sh_DATA = $(install_sh) -c -m 644
 install_sh_PROGRAM = $(install_sh) -c
@@ -41,6 +60,7 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGUR
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
 CONFIG_CLEAN_FILES =
+CONFIG_CLEAN_VPATH_FILES =
 LIBRARIES = $(noinst_LIBRARIES)
 AR = ar
 ARFLAGS = cru
@@ -54,17 +74,24 @@ libio_a_OBJECTS = $(am_libio_a_OBJECTS)
 DEFAULT_INCLUDES = -I.@am__isrc@
 depcomp = $(SHELL) $(top_srcdir)/depcomp
 am__depfiles_maybe = depfiles
+am__mv = mv -f
 COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
 	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
 CCLD = $(CC)
 LINK = $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
 SOURCES = $(libio_a_SOURCES)
 DIST_SOURCES = $(libio_a_SOURCES)
+am__can_run_installinfo = \
+  case $$AM_UPDATE_INFO_DIR in \
+    n|no|NO) false;; \
+    *) (install-info --version) >/dev/null 2>&1;; \
+  esac
 ETAGS = etags
 CTAGS = ctags
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
 ACLOCAL = @ACLOCAL@
 AMTAR = @AMTAR@
+ASIR_GCLIB = @ASIR_GCLIB@
 AUTOCONF = @AUTOCONF@
 AUTOHEADER = @AUTOHEADER@
 AUTOMAKE = @AUTOMAKE@
@@ -84,6 +111,8 @@ EGREP = @EGREP@
 EXEEXT = @EXEEXT@
 FEPLIB = @FEPLIB@
 GC = @GC@
+GCINC = @GCINC@
+GCLIB = @GCLIB@
 GC_CONFIGURE_ARGS = @GC_CONFIGURE_ARGS@
 GC_DISTDIR = @GC_DISTDIR@
 GREP = @GREP@
@@ -101,14 +130,13 @@ LTLIBOBJS = @LTLIBOBJS@
 MAINT = @MAINT@
 MAKEINFO = @MAKEINFO@
 MKDIR_P = @MKDIR_P@
-MPIINC = @MPIINC@
-MPILIB = @MPILIB@
 OBJEXT = @OBJEXT@
 PACKAGE = @PACKAGE@
 PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
 PACKAGE_NAME = @PACKAGE_NAME@
 PACKAGE_STRING = @PACKAGE_STRING@
 PACKAGE_TARNAME = @PACKAGE_TARNAME@
+PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PARIINC = @PARIINC@
 PARILIB = @PARILIB@
@@ -117,9 +145,7 @@ RANLIB = @RANLIB@
 SET_MAKE = @SET_MAKE@
 SHELL = @SHELL@
 STRIP = @STRIP@
-USE_GC_INTERIX = @USE_GC_INTERIX@
 USE_GC_SPARC64 = @USE_GC_SPARC64@
-USE_GC_ZEROPAGE = @USE_GC_ZEROPAGE@
 VERSION = @VERSION@
 XMKMF = @XMKMF@
 XPMLIB = @XPMLIB@
@@ -182,12 +208,13 @@ target_alias = @target_alias@
 target_cpu = @target_cpu@
 target_os = @target_os@
 target_vendor = @target_vendor@
+top_build_prefix = @top_build_prefix@
 top_builddir = @top_builddir@
 top_srcdir = @top_srcdir@
 asirdir = ${prefix}/lib/asir
 INCLUDES = -I${top_srcdir}/include -I${top_srcdir}/parse -I${top_srcdir}/io \
            -I${top_srcdir}/gc/include \
-           @PARIINC@ @MPIINC@ @X_CFLAGS@
+           @PARIINC@ @X_CFLAGS@
 
 noinst_LIBRARIES = libio.a
 libio_a_SOURCES = pexpr.c spexpr.c biovar.c bsave.c bload.c io.c sio.c \
@@ -201,14 +228,14 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir
 	@for dep in $?; do \
 	  case '$(am__configure_deps)' in \
 	    *$$dep*) \
-	      cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh \
-		&& exit 0; \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
 	      exit 1;; \
 	  esac; \
 	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  io/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  io/Makefile
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu io/Makefile'; \
+	$(am__cd) $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu io/Makefile
 .PRECIOUS: Makefile
 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 	@case '$?' in \
@@ -226,10 +253,11 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__
 	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
 $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps)
 	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(am__aclocal_m4_deps):
 
 clean-noinstLIBRARIES:
 	-test -z "$(noinst_LIBRARIES)" || rm -f $(noinst_LIBRARIES)
-libio.a: $(libio_a_OBJECTS) $(libio_a_DEPENDENCIES) 
+libio.a: $(libio_a_OBJECTS) $(libio_a_DEPENDENCIES) $(EXTRA_libio_a_DEPENDENCIES) 
 	-rm -f libio.a
 	$(libio_a_AR) libio.a $(libio_a_OBJECTS) $(libio_a_LIBADD)
 	$(RANLIB) libio.a
@@ -257,14 +285,14 @@ distclean-compile:
 
 .c.o:
 @am__fastdepCC_TRUE@	$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
-@am__fastdepCC_TRUE@	mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 @am__fastdepCC_FALSE@	$(COMPILE) -c $<
 
 .c.obj:
 @am__fastdepCC_TRUE@	$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
-@am__fastdepCC_TRUE@	mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 @am__fastdepCC_FALSE@	$(COMPILE) -c `$(CYGPATH_W) '$<'`
@@ -274,45 +302,49 @@ ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
 	unique=`for i in $$list; do \
 	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
 	  done | \
-	  $(AWK) '    { files[$$0] = 1; } \
-	       END { for (i in files) print i; }'`; \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
 	mkid -fID $$unique
 tags: TAGS
 
 TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
 		$(TAGS_FILES) $(LISP)
-	tags=; \
+	set x; \
 	here=`pwd`; \
 	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
 	unique=`for i in $$list; do \
 	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
 	  done | \
-	  $(AWK) '    { files[$$0] = 1; } \
-	       END { for (i in files) print i; }'`; \
-	if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	shift; \
+	if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
 	  test -n "$$unique" || unique=$$empty_fix; \
-	  $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
-	    $$tags $$unique; \
+	  if test $$# -gt 0; then \
+	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	      "$$@" $$unique; \
+	  else \
+	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	      $$unique; \
+	  fi; \
 	fi
 ctags: CTAGS
 CTAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
 		$(TAGS_FILES) $(LISP)
-	tags=; \
-	here=`pwd`; \
 	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
 	unique=`for i in $$list; do \
 	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
 	  done | \
-	  $(AWK) '    { files[$$0] = 1; } \
-	       END { for (i in files) print i; }'`; \
-	test -z "$(CTAGS_ARGS)$$tags$$unique" \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	test -z "$(CTAGS_ARGS)$$unique" \
 	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
-	     $$tags $$unique
+	     $$unique
 
 GTAGS:
 	here=`$(am__cd) $(top_builddir) && pwd` \
-	  && cd $(top_srcdir) \
-	  && gtags -i $(GTAGS_ARGS) $$here
+	  && $(am__cd) $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) "$$here"
 
 distclean-tags:
 	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
@@ -333,13 +365,17 @@ distdir: $(DISTFILES)
 	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
 	  if test -d $$d/$$file; then \
 	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d "$(distdir)/$$file"; then \
+	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
+	    fi; \
 	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
+	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
 	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
 	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
+	    test -f "$(distdir)/$$file" \
+	    || cp -p $$d/$$file "$(distdir)/$$file" \
 	    || exit 1; \
 	  fi; \
 	done
@@ -357,16 +393,22 @@ install-am: all-am
 
 installcheck: installcheck-am
 install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+	if test -z '$(STRIP)'; then \
+	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	      install; \
+	else \
+	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	    "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
+	fi
 mostlyclean-generic:
 
 clean-generic:
 
 distclean-generic:
 	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
 
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
@@ -387,6 +429,8 @@ dvi-am:
 
 html: html-am
 
+html-am:
+
 info: info-am
 
 info-am:
@@ -395,18 +439,28 @@ install-data-am:
 
 install-dvi: install-dvi-am
 
+install-dvi-am:
+
 install-exec-am:
 
 install-html: install-html-am
 
+install-html-am:
+
 install-info: install-info-am
 
+install-info-am:
+
 install-man:
 
 install-pdf: install-pdf-am
 
+install-pdf-am:
+
 install-ps: install-ps-am
 
+install-ps-am:
+
 installcheck-am:
 
 maintainer-clean: maintainer-clean-am
@@ -442,6 +496,7 @@ uninstall-am:
 	maintainer-clean-generic mostlyclean mostlyclean-compile \
 	mostlyclean-generic pdf pdf-am ps ps-am tags uninstall \
 	uninstall-am
+
 
 # Tell versions [3.59,3.63) of GNU make to not export all variables.
 # Otherwise a system limit (for SysV at least) may be exceeded.