\input texinfo @c -*-texinfo-*- @c %**start of header @setfilename gnuplot.info @settitle Gnuplot: An Interactive Plotting Program @setchapternewpage odd @c %**end of header @c define the command and options indeces @defindex cm @defindex op @defindex tm @direntry * GNUPLOT: (gnuplot). An Interactive Plotting Program @end direntry @ifnottex @node Top, gnuplot, (dir), (dir) @top Master Menu @end ifnottex @example GNUPLOT An Interactive Plotting Program Thomas Williams & Colin Kelley Version 3.7 organized by: David Denholm Copyright (C) 1986 - 1993, 1998 Thomas Williams, Colin Kelley Mailing list for comments: info-gnuplot@@dartmouth.edu Mailing list for bug reports: bug-gnuplot@@dartmouth.edu This manual was prepared by Dick Crawford 3 December 1998 Major contributors (alphabetic order): @end example @c ^

An Interactive Plotting Program

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Thomas Williams & Colin Kelley

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Version 3.7 organized by: David Denholm

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Major contributors (alphabetic order):

@itemize @bullet @item Hans-Bernhard Broeker @item John Campbell @item Robert Cunningham @item David Denholm @item Gershon Elber @item Roger Fearick @item Carsten Grammes @item Lucas Hart @item Lars Hecking @item Thomas Koenig @item David Kotz @item Ed Kubaitis @item Russell Lang @item Alexander Lehmann @item Alexander Mai @item Carsten Steger @item Tom Tkacik @item Jos Van der Woude @item James R. Van Zandt @item Alex Woo @end itemize @c ^

Copyright (C) 1986 - 1993, 1998 Thomas Williams, Colin Kelley

@c ^ Mailing list for comments: info-gnuplot@@dartmouth.edu

@c ^ Mailing list for bug reports: bug-gnuplot@@dartmouth.edu

@c ^

@c ^

This manual was prepared by Dick Crawford

@c ^

3 December 1998

@c ^


@menu * gnuplot:: * Commands:: * Graphical_User_Interfaces:: * Bugs:: * Concept_Index:: * Command_Index:: * Options_Index:: * Function_Index:: * Terminal_Index:: @end menu @node gnuplot, Commands, Top, Top @chapter gnuplot @menu * Copyright:: * Introduction:: * Seeking-assistance:: * What's_New_in_version_3.7:: * Batch/Interactive_Operation:: * Command-line-editing:: * Comments:: * Coordinates:: * Environment:: * Expressions:: * Glossary:: * Plotting:: * Start-up:: * Substitution:: * Syntax:: * Time/Date_data:: @end menu @node Copyright, Introduction, gnuplot, gnuplot @section Copyright @cindex copyright @cindex license @example Copyright (C) 1986 - 1993, 1998 Thomas Williams, Colin Kelley @end example Permission to use, copy, and distribute this software and its documentation for any purpose with or without fee is hereby granted, provided that the above copyright notice appear in all copies and that both that copyright notice and this permission notice appear in supporting documentation. Permission to modify the software is granted, but not the right to distribute the complete modified source code. Modifications are to be distributed as patches to the released version. Permission to distribute binaries produced by compiling modified sources is granted, provided you @example 1. distribute the corresponding source modifications from the released version in the form of a patch file along with the binaries, 2. add special version identification to distinguish your version in addition to the base release version number, 3. provide your name and address as the primary contact for the support of your modified version, and 4. retain our contact information in regard to use of the base software. @end example Permission to distribute the released version of the source code along with corresponding source modifications in the form of a patch file is granted with same provisions 2 through 4 for binary distributions. This software is provided "as is" without express or implied warranty to the extent permitted by applicable law. @example AUTHORS @end example @example Original Software: Thomas Williams, Colin Kelley. @end example @example Gnuplot 2.0 additions: Russell Lang, Dave Kotz, John Campbell. @end example @example Gnuplot 3.0 additions: Gershon Elber and many others. @end example @node Introduction, Seeking-assistance, Copyright, gnuplot @section Introduction @cindex introduction @c ? `gnuplot` is a command-driven interactive function and data plotting program. It is case sensitive (commands and function names written in lowercase are not the same as those written in CAPS). All command names may be abbreviated as long as the abbreviation is not ambiguous. Any number of commands may appear on a line (with the exception that @ref{load} or @ref{call} must be the final command), separated by semicolons (;). Strings are indicated with quotes. They may be either single or double quotation marks, e.g., @example load "filename" cd 'dir' @end example although there are some subtle differences (see `syntax` for more details). Any command-line arguments are assumed to be names of files containing `gnuplot` commands, with the exception of standard X11 arguments, which are processed first. Each file is loaded with the @ref{load} command, in the order specified. `gnuplot` exits after the last file is processed. When no load files are named, `gnuplot` enters into an interactive mode. The special filename "-" is used to denote standard input. See "help batch/interactive" for more details. Many `gnuplot` commands have multiple options. These options must appear in the proper order, although unwanted ones may be omitted in most cases. Thus if the entire command is "command a b c", then "command a c" will probably work, but "command c a" will fail. Commands may extend over several input lines by ending each line but the last with a backslash (\). The backslash must be the _last_ character on each line. The effect is as if the backslash and newline were not there. That is, no white space is implied, nor is a comment terminated. Therefore, commenting out a continued line comments out the entire command (see `comment`). But note that if an error occurs somewhere on a multi-line command, the parser may not be able to locate precisely where the error is and in that case will not necessarily point to the correct line. In this document, curly braces (@{@}) denote optional arguments and a vertical bar (|) separates mutually exclusive choices. `gnuplot` keywords or @ref{help} topics are indicated by backquotes or `boldface` (where available). Angle brackets (<>) are used to mark replaceable tokens. In many cases, a default value of the token will be taken for optional arguments if the token is omitted, but these cases are not always denoted with braces around the angle brackets. For on-line help on any topic, type @ref{help} followed by the name of the topic or just @ref{help} or `?` to get a menu of available topics. The new `gnuplot` user should begin by reading about `plotting` (if on-line, type `help plotting`). @uref{http://www.gnuplot.vt.edu/gnuplot/gpdocs/simple.html,Simple Plots Demo } @node Seeking-assistance, What's_New_in_version_3.7, Introduction, gnuplot @section Seeking-assistance @cindex seeking-assistance There is a mailing list for `gnuplot` users. Note, however, that the newsgroup @example comp.graphics.apps.gnuplot @end example is identical to the mailing list (they both carry the same set of messages). We prefer that you read the messages through the newsgroup rather than subscribing to the mailing list. Administrative requests should be sent to @example majordomo@@dartmouth.edu @end example Send a message with the body (not the subject) consisting of the single word "help" (without the quotes) for more details. The address for mailing to list members is: @example info-gnuplot@@dartmouth.edu @end example Bug reports and code contributions should be mailed to: @example bug-gnuplot@@dartmouth.edu @end example The list of those interested in beta-test versions is: @example info-gnuplot-beta@@dartmouth.edu @end example There is also a World Wide Web page with up-to-date information, including known bugs: @uref{http://www.cs.dartmouth.edu/gnuplot_info.html,http://www.cs.dartmouth.edu/gnuplot_info.html } Before seeking help, please check the @uref{http://www.ucc.ie/gnuplot/gnuplot-faq.html,FAQ (Frequently Asked Questions) list. } If you do not have a copy of the FAQ, you may request a copy by email from the Majordomo address above, ftp a copy from @example ftp://ftp.ucc.ie/pub/gnuplot/faq, ftp://ftp.gnuplot.vt.edu/pub/gnuplot/faq, @end example or see the WWW `gnuplot` page. When posting a question, please include full details of the version of `gnuplot`, the machine, and operating system you are using. A _small_ script demonstrating the problem may be useful. Function plots are preferable to datafile plots. If email-ing to info-gnuplot, please state whether or not you are subscribed to the list, so that users who use news will know to email a reply to you. There is a form for such postings on the WWW site. @node What's_New_in_version_3.7, Batch/Interactive_Operation, Seeking-assistance, gnuplot @section What's New in version 3.7 @cindex new-features Gnuplot version 3.7 contains many new features. This section gives a partial list and links to the new items in no particular order. 1. `fit f(x) 'file' via` uses the Marquardt-Levenberg method to fit data. (This is only slightly different from the `gnufit` patch available for 3.5.) 2. Greatly expanded @ref{using} command. See @ref{using}. 3. @ref{timefmt} allows for the use of dates as input and output for time series plots. See `Time/Date data` and @uref{http://www.gnuplot.vt.edu/gnuplot/gpdocs/timedat.html,timedat.dem. } 4. Multiline labels and font selection in some drivers. 5. Minor (unlabeled) tics. See @ref{mxtics}. 6. @ref{key} options for moving the key box in the page (and even outside of the plot), putting a title on it and a box around it, and more. See @ref{key}. 7. Multiplots on a single logical page with @ref{multiplot}. 8. Enhanced `postscript` driver with super/subscripts and font changes. (This was a separate driver (`enhpost`) that was available as a patch for 3.5.) 9. Second axes: use the top and right axes independently of the bottom and left, both for plotting and labels. See @ref{plot}. 10. Special datafile names `'-'` and `""`. See @ref{special-filenames}. 11. Additional coordinate systems for labels and arrows. See `coordinates`. 12. @ref{size} can try to plot with a specified aspect ratio. 13. @ref{missing} now treats missing data correctly. 14. The @ref{call} command: @ref{load} with arguments. 15. More flexible `range` commands with `reverse` and `writeback` keywords. 16. @ref{encoding} for multi-lingual encoding. 17. New `x11` driver with persistent and multiple windows. 18. New plotting styles: @ref{xerrorbars}, @ref{histeps}, @ref{financebars} and more. See @ref{style}. 19. New tic label formats, including `"%l %L"` which uses the mantissa and exponents to a given base for labels. See `set format`. 20. New drivers, including `cgm` for inclusion into MS-Office applications and `gif` for serving plots to the WEB. 21. Smoothing and spline-fitting options for @ref{plot}. See @ref{smooth}. 22. @ref{margin} and @ref{origin} give much better control over where a graph appears on the page. 23. @ref{border} now controls each border individually. 24. The new commands @ref{if} and @ref{reread} allow command loops. 25. Point styles and sizes, line types and widths can be specified on the @ref{plot} command. Line types and widths can also be specified for grids, borders, tics and arrows. See @ref{with}. Furthermore these types may be combined and stored for further use. See @ref{linestyle}. 26. Text (labels, tic labels, and the time stamp) can be written vertically by those terminals capable of doing so. @node Batch/Interactive_Operation, Command-line-editing, What's_New_in_version_3.7, gnuplot @section Batch/Interactive Operation @cindex batch/interactive `gnuplot` may be executed in either batch or interactive modes, and the two may even be mixed together on many systems. Any command-line arguments are assumed to be names of files containing `gnuplot` commands (with the exception of standard X11 arguments, which are processed first). Each file is loaded with the @ref{load} command, in the order specified. `gnuplot` exits after the last file is processed. When no load files are named, `gnuplot` enters into an interactive mode. The special filename "-" is used to denote standard input. Both the @ref{exit} and @ref{quit} commands terminate the current command file and @ref{load} the next one, until all have been processed. Examples: To launch an interactive session: @example gnuplot @end example To launch a batch session using two command files "input1" and "input2": @example gnuplot input1 input2 @end example To launch an interactive session after an initialization file "header" and followed by another command file "trailer": @example gnuplot header - trailer @end example @node Command-line-editing, Comments, Batch/Interactive_Operation, gnuplot @section Command-line-editing @cindex line-editing @cindex editing @cindex history @cindex command-line-editing Command-line editing is supported by the Unix, Atari, VMS, MS-DOS and OS/2 versions of `gnuplot`. Also, a history mechanism allows previous commands to be edited and re-executed. After the command line has been edited, a newline or carriage return will enter the entire line without regard to where the cursor is positioned. (The readline function in `gnuplot` is not the same as the readline used in GNU Bash and GNU Emacs. If the GNU version is desired, it may be selected instead of the `gnuplot` version at compile time.) The editing commands are as follows: @example `Line-editing`: @end example @example ^B moves back a single character. ^F moves forward a single character. ^A moves to the beginning of the line. ^E moves to the end of the line. ^H and DEL delete the previous character. ^D deletes the current character. ^K deletes from current position to the end of line. ^L,^R redraws line in case it gets trashed. ^U deletes the entire line. ^W deletes the last word. @end example @example `History`: @end example @example ^P moves back through history. ^N moves forward through history. @end example On the IBM PC, the use of a TSR program such as DOSEDIT or CED may be desired for line editing. The default makefile assumes that this is the case; by default `gnuplot` will be compiled with no line-editing capability. If you want to use `gnuplot`'s line editing, set READLINE in the makefile and add readline.obj to the link file. The following arrow keys may be used on the IBM PC and Atari versions if readline is used: @example Left Arrow - same as ^B. Right Arrow - same as ^F. Ctrl Left Arrow - same as ^A. Ctrl Right Arrow - same as ^E. Up Arrow - same as ^P. Down Arrow - same as ^N. @end example The Atari version of readline defines some additional key aliases: @example Undo - same as ^L. Home - same as ^A. Ctrl Home - same as ^E. Esc - same as ^U. Help - @ref{help} plus return. Ctrl Help - `help `. @end example @node Comments, Coordinates, Command-line-editing, gnuplot @section Comments @cindex comments Comments are supported as follows: a `#` may appear in most places in a line and `gnuplot` will ignore the rest of the line. It will not have this effect inside quotes, inside numbers (including complex numbers), inside command substitutions, etc. In short, it works anywhere it makes sense to work. @node Coordinates, Environment, Comments, gnuplot @section Coordinates @cindex coordinates The commands @ref{arrow}, @ref{key}, and @ref{label} allow you to draw something at an arbitrary position on the graph. This position is specified by the syntax: @example @{@} , @{@} @{,@{@} @} @end example Each can either be `first`, `second`, `graph` or `screen`. `first` places the x, y, or z coordinate in the system defined by the left and bottom axes; `second` places it in the system defined by the second axes (top and right); `graph` specifies the area within the axes---0,0 is bottom left and 1,1 is top right (for splot, 0,0,0 is bottom left of plotting area; use negative z to get to the base---see @ref{ticslevel}); and `screen` specifies the screen area (the entire area---not just the portion selected by @ref{size}), with 0,0 at bottom left and 1,1 at top right. If the coordinate system for x is not specified, `first` is used. If the system for y is not specified, the one used for x is adopted. If one (or more) axis is timeseries, the appropriate coordinate should be given as a quoted time string according to the @ref{timefmt} format string. See @ref{xdata} and @ref{timefmt}. `gnuplot` will also accept an integer expression, which will be interpreted as seconds from 1 January 2000. @node Environment, Expressions, Coordinates, gnuplot @section Environment @cindex environment A number of shell environment variables are understood by `gnuplot`. None of these are required, but may be useful. If GNUTERM is defined, it is used as the name of the terminal type to be used. This overrides any terminal type sensed by `gnuplot` on start-up, but is itself overridden by the .gnuplot (or equivalent) start-up file (see `start-up`) and, of course, by later explicit changes. On Unix, AmigaOS, AtariTOS, MS-DOS and OS/2, GNUHELP may be defined to be the pathname of the HELP file (gnuplot.gih). On VMS, the logical name GNUPLOT$HELP should be defined as the name of the help library for `gnuplot`. The `gnuplot` help can be put inside any system help library, allowing access to help from both within and outside `gnuplot` if desired. On Unix, HOME is used as the name of a directory to search for a .gnuplot file if none is found in the current directory. On AmigaOS, AtariTOS, MS-DOS and OS/2, gnuplot is used. On VMS, SYS$LOGIN: is used. See `help start-up`. On Unix, PAGER is used as an output filter for help messages. On Unix, AtariTOS and AmigaOS, SHELL is used for the @ref{shell} command. On MS-DOS and OS/2, COMSPEC is used for the @ref{shell} command. On MS-DOS, if the BGI or Watcom interface is used, PCTRM is used to tell the maximum resolution supported by your monitor by setting it to S. E.g. if your monitor's maximum resolution is 800x600, then use: @example set PCTRM=S800 @end example If PCTRM is not set, standard VGA is used. FIT_SCRIPT may be used to specify a `gnuplot` command to be executed when a fit is interrupted---see `fit`. FIT_LOG specifies the filename of the logfile maintained by fit. @node Expressions, Glossary, Environment, gnuplot @section Expressions @cindex expressions In general, any mathematical expression accepted by C, FORTRAN, Pascal, or BASIC is valid. The precedence of these operators is determined by the specifications of the C programming language. White space (spaces and tabs) is ignored inside expressions. Complex constants are expressed as @{,@}, where and must be numerical constants. For example, @{3,2@} represents 3 + 2i; @{0,1@} represents 'i' itself. The curly braces are explicitly required here. Note that gnuplot uses both "real" and "integer" arithmetic, like FORTRAN and C. Integers are entered as "1", "-10", etc; reals as "1.0", "-10.0", "1e1", 3.5e-1, etc. The most important difference between the two forms is in division: division of integers truncates: 5/2 = 2; division of reals does not: 5.0/2.0 = 2.5. In mixed expressions, integers are "promoted" to reals before evaluation: 5/2e0 = 2.5. The result of division of a negative integer by a positive one may vary among compilers. Try a test like "print -5/2" to determine if your system chooses -2 or -3 as the answer. The integer expression "1/0" may be used to generate an "undefined" flag, which causes a point to ignored; the `ternary` operator gives an example. The real and imaginary parts of complex expressions are always real, whatever the form in which they are entered: in @{3,2@} the "3" and "2" are reals, not integers. @menu * Functions:: * Operators:: * User-defined:: @end menu @node Functions, Operators, Expressions, Expressions @subsection Functions @c ?expressions functions @cindex functions @opindex functions The functions in `gnuplot` are the same as the corresponding functions in the Unix math library, except that all functions accept integer, real, and complex arguments, unless otherwise noted. For those functions that accept or return angles that may be given in either degrees or radians (sin(x), cos(x), tan(x), asin(x), acos(x), atan(x), atan2(x) and arg(z)), the unit may be selected by @ref{angles}, which defaults to radians. @menu * abs:: * acos:: * acosh:: * arg:: * asin:: * asinh:: * atan:: * atan2:: * atanh:: * besj0:: * besj1:: * besy0:: * besy1:: * ceil:: * cos:: * cosh:: * erf:: * erfc:: * exp:: * floor:: * gamma:: * ibeta:: * inverf:: * igamma:: * imag:: * invnorm:: * int:: * lgamma:: * log:: * log10:: * norm:: * rand:: * real:: * sgn:: * sin:: * sinh:: * sqrt:: * tan:: * tanh:: * column:: * tm_hour:: * tm_mday:: * tm_min:: * tm_mon:: * tm_sec:: * tm_wday:: * tm_yday:: * tm_year:: * valid:: @end menu @node abs, acos, Functions, Functions @subsubsection abs @c ?expressions functions abs @c ?functions abs @cindex abs @findex abs The `abs(x)` function returns the absolute value of its argument. The returned value is of the same type as the argument. For complex arguments, abs(x) is defined as the length of x in the complex plane [i.e., sqrt(real(x)**2 + imag(x)**2) ]. @node acos, acosh, abs, Functions @subsubsection acos @c ?expressions functions acos @c ?functions acos @cindex acos @findex acos The `acos(x)` function returns the arc cosine (inverse cosine) of its argument. `acos` returns its argument in radians or degrees, as selected by @ref{angles}. @node acosh, arg, acos, Functions @subsubsection acosh @c ?expressions functions acosh @c ?functions acosh @cindex acosh @findex acosh The `acosh(x)` function returns the inverse hyperbolic cosine of its argument in radians. @node arg, asin, acosh, Functions @subsubsection arg @c ?expressions functions arg @c ?functions arg @cindex arg @findex arg The `arg(x)` function returns the phase of a complex number in radians or degrees, as selected by @ref{angles}. @node asin, asinh, arg, Functions @subsubsection asin @c ?expressions functions asin @c ?functions asin @cindex asin @findex asin The `asin(x)` function returns the arc sin (inverse sin) of its argument. `asin` returns its argument in radians or degrees, as selected by @ref{angles}. @node asinh, atan, asin, Functions @subsubsection asinh @c ?expressions functions asinh @c ?functions asinh @cindex asinh @findex asinh The `asinh(x)` function returns the inverse hyperbolic sin of its argument in radians. @node atan, atan2, asinh, Functions @subsubsection atan @c ?expressions functions atan @c ?functions atan @cindex atan @findex atan The `atan(x)` function returns the arc tangent (inverse tangent) of its argument. `atan` returns its argument in radians or degrees, as selected by @ref{angles}. @node atan2, atanh, atan, Functions @subsubsection atan2 @c ?expressions functions atan2 @c ?functions atan2 @cindex atan2 @findex atan2 The `atan2(y,x)` function returns the arc tangent (inverse tangent) of the ratio of the real parts of its arguments. @ref{atan2} returns its argument in radians or degrees, as selected by @ref{angles}, in the correct quadrant. @node atanh, besj0, atan2, Functions @subsubsection atanh @c ?expressions functions atanh @c ?functions atanh @cindex atanh @findex atanh The `atanh(x)` function returns the inverse hyperbolic tangent of its argument in radians. @node besj0, besj1, atanh, Functions @subsubsection besj0 @c ?expressions functions besj0 @c ?functions besj0 @cindex besj0 @findex besj0 The `besj0(x)` function returns the j0th Bessel function of its argument. @ref{besj0} expects its argument to be in radians. @node besj1, besy0, besj0, Functions @subsubsection besj1 @c ?expressions functions besj1 @c ?functions besj1 @cindex besj1 @findex besj1 The `besj1(x)` function returns the j1st Bessel function of its argument. @ref{besj1} expects its argument to be in radians. @node besy0, besy1, besj1, Functions @subsubsection besy0 @c ?expressions functions besy0 @c ?functions besy0 @cindex besy0 @findex besy0 The @ref{besy0} function returns the y0th Bessel function of its argument. @ref{besy0} expects its argument to be in radians. @node besy1, ceil, besy0, Functions @subsubsection besy1 @c ?expressions functions besy1 @c ?functions besy1 @cindex besy1 @findex besy1 The `besy1(x)` function returns the y1st Bessel function of its argument. @ref{besy1} expects its argument to be in radians. @node ceil, cos, besy1, Functions @subsubsection ceil @c ?expressions functions ceil @c ?functions ceil @cindex ceil @findex ceil The `ceil(x)` function returns the smallest integer that is not less than its argument. For complex numbers, @ref{ceil} returns the smallest integer not less than the real part of its argument. @node cos, cosh, ceil, Functions @subsubsection cos @c ?expressions functions cos @c ?functions cos @cindex cos @findex cos The `cos(x)` function returns the cosine of its argument. `cos` accepts its argument in radians or degrees, as selected by @ref{angles}. @node cosh, erf, cos, Functions @subsubsection cosh @c ?expressions functions cosh @c ?functions cosh @cindex cosh @findex cosh The `cosh(x)` function returns the hyperbolic cosine of its argument. @ref{cosh} expects its argument to be in radians. @node erf, erfc, cosh, Functions @subsubsection erf @c ?expressions functions erf @c ?functions erf @cindex erf @findex erf The `erf(x)` function returns the error function of the real part of its argument. If the argument is a complex value, the imaginary component is ignored. @node erfc, exp, erf, Functions @subsubsection erfc @c ?expressions functions erfc @c ?functions erfc @cindex erfc @findex erfc The `erfc(x)` function returns 1.0 - the error function of the real part of its argument. If the argument is a complex value, the imaginary component is ignored. @node exp, floor, erfc, Functions @subsubsection exp @c ?expressions functions exp @c ?functions exp @cindex exp @findex exp The `exp(x)` function returns the exponential function of its argument (`e` raised to the power of its argument). On some implementations (notably suns), exp(-x) returns undefined for very large x. A user-defined function like safe(x) = x<-100 ? 0 : exp(x) might prove useful in these cases. @node floor, gamma, exp, Functions @subsubsection floor @c ?expressions functions floor @c ?functions floor @cindex floor @findex floor The `floor(x)` function returns the largest integer not greater than its argument. For complex numbers, @ref{floor} returns the largest integer not greater than the real part of its argument. @node gamma, ibeta, floor, Functions @subsubsection gamma @c ?expressions functions gamma @c ?functions gamma @cindex gamma @findex gamma The `gamma(x)` function returns the gamma function of the real part of its argument. For integer n, gamma(n+1) = n!. If the argument is a complex value, the imaginary component is ignored. @node ibeta, inverf, gamma, Functions @subsubsection ibeta @c ?expressions functions ibeta @c ?functions ibeta @cindex ibeta @findex ibeta The `ibeta(p,q,x)` function returns the incomplete beta function of the real parts of its arguments. p, q > 0 and x in [0:1]. If the arguments are complex, the imaginary components are ignored. @node inverf, igamma, ibeta, Functions @subsubsection inverf @c ?expressions functions inverf @c ?functions inverf @cindex inverf @findex inverf The `inverf(x)` function returns the inverse error function of the real part of its argument. @node igamma, imag, inverf, Functions @subsubsection igamma @c ?expressions functions igamma @c ?functions igamma @cindex igamma @findex igamma The `igamma(a,x)` function returns the incomplete gamma function of the real parts of its arguments. a > 0 and x >= 0. If the arguments are complex, the imaginary components are ignored. @node imag, invnorm, igamma, Functions @subsubsection imag @c ?expressions functions imag @c ?functions imag @cindex imag @findex imag The `imag(x)` function returns the imaginary part of its argument as a real number. @node invnorm, int, imag, Functions @subsubsection invnorm @c ?expressions functions invnorm @c ?functions invnorm @cindex invnorm @findex invnorm The `invnorm(x)` function returns the inverse normal distribution function of the real part of its argument. @node int, lgamma, invnorm, Functions @subsubsection int @c ?expressions functions int @c ?functions int @cindex int @findex int The `int(x)` function returns the integer part of its argument, truncated toward zero. @node lgamma, log, int, Functions @subsubsection lgamma @c ?expressions functions lgamma @c ?functions lgamma @cindex lgamma @findex lgamma The `lgamma(x)` function returns the natural logarithm of the gamma function of the real part of its argument. If the argument is a complex value, the imaginary component is ignored. @node log, log10, lgamma, Functions @subsubsection log @c ?expressions functions log @c ?functions log @cindex log @findex log The `log(x)` function returns the natural logarithm (base `e`) of its argument. @node log10, norm, log, Functions @subsubsection log10 @c ?expressions functions log10 @c ?functions log10 @cindex log10 @findex log10 The `log10(x)` function returns the logarithm (base 10) of its argument. @node norm, rand, log10, Functions @subsubsection norm @c ?expressions functions norm @c ?functions norm @cindex norm @findex norm The `norm(x)` function returns the normal distribution function (or Gaussian) of the real part of its argument. @node rand, real, norm, Functions @subsubsection rand @c ?expressions functions rand @c ?functions rand @cindex rand @findex rand The `rand(x)` function returns a pseudo random number in the interval [0:1] using the real part of its argument as a seed. If seed < 0, the sequence is (re)initialized. If the argument is a complex value, the imaginary component is ignored. @node real, sgn, rand, Functions @subsubsection real @c ?expressions functions real @c ?functions real @cindex real @findex real The `real(x)` function returns the real part of its argument. @node sgn, sin, real, Functions @subsubsection sgn @c ?expressions functions sgn @c ?functions sgn @cindex sgn @findex sgn The `sgn(x)` function returns 1 if its argument is positive, -1 if its argument is negative, and 0 if its argument is 0. If the argument is a complex value, the imaginary component is ignored. @node sin, sinh, sgn, Functions @subsubsection sin @c ?expressions functions sin @c ?functions sin @cindex sin @findex sin The `sin(x)` function returns the sine of its argument. `sin` expects its argument to be in radians or degrees, as selected by @ref{angles}. @node sinh, sqrt, sin, Functions @subsubsection sinh @c ?expressions functions sinh @c ?functions sinh @cindex sinh @findex sinh The `sinh(x)` function returns the hyperbolic sine of its argument. @ref{sinh} expects its argument to be in radians. @node sqrt, tan, sinh, Functions @subsubsection sqrt @c ?expressions functions sqrt @c ?functions sqrt @cindex sqrt @findex sqrt The `sqrt(x)` function returns the square root of its argument. @node tan, tanh, sqrt, Functions @subsubsection tan @c ?expressions functions tan @c ?functions tan @cindex tan @findex tan The `tan(x)` function returns the tangent of its argument. `tan` expects its argument to be in radians or degrees, as selected by @ref{angles}. @node tanh, column, tan, Functions @subsubsection tanh @c ?expressions functions tanh @c ?functions tanh @cindex tanh @findex tanh The `tanh(x)` function returns the hyperbolic tangent of its argument. @ref{tanh} expects its argument to be in radians. A few additional functions are also available. @node column, tm_hour, tanh, Functions @subsubsection column @c ?expressions functions column @c ?functions column @cindex column @findex column `column(x)` may be used only in expressions as part of @ref{using} manipulations to fits or datafile plots. See @ref{using}. @node tm_hour, tm_mday, column, Functions @subsubsection tm_hour @c ?expressions tm_hour @findex tm_hour @c ?functions tm_hour The @ref{tm_hour} function interprets its argument as a time, in seconds from 1 Jan 2000. It returns the hour (an integer in the range 0--23) as a real. @node tm_mday, tm_min, tm_hour, Functions @subsubsection tm_mday @c ?expressions tm_mday @findex tm_mday @c ?functions tm_mday The @ref{tm_mday} function interprets its argument as a time, in seconds from 1 Jan 2000. It returns the day of the month (an integer in the range 1--31) as a real. @node tm_min, tm_mon, tm_mday, Functions @subsubsection tm_min @c ?expressions tm_min @findex tm_min @c ?functions tm_min The @ref{tm_min} function interprets its argument as a time, in seconds from 1 Jan 2000. It returns the minute (an integer in the range 0--59) as a real. @node tm_mon, tm_sec, tm_min, Functions @subsubsection tm_mon @c ?expressions tm_mon @findex tm_mon @c ?functions tm_mon The @ref{tm_mon} function interprets its argument as a time, in seconds from 1 Jan 2000. It returns the month (an integer in the range 1--12) as a real. @node tm_sec, tm_wday, tm_mon, Functions @subsubsection tm_sec @c ?expressions tm_sec @findex tm_sec @c ?functions tm_sec The @ref{tm_sec} function interprets its argument as a time, in seconds from 1 Jan 2000. It returns the second (an integer in the range 0--59) as a real. @node tm_wday, tm_yday, tm_sec, Functions @subsubsection tm_wday @c ?expressions tm_wday @findex tm_wday @c ?functions tm_wday The @ref{tm_wday} function interprets its argument as a time, in seconds from 1 Jan 2000. It returns the day of the week (an integer in the range 1--7) as a real. @node tm_yday, tm_year, tm_wday, Functions @subsubsection tm_yday @c ?expressions tm_yday @findex tm_yday @c ?functions tm_yday The @ref{tm_yday} function interprets its argument as a time, in seconds from 1 Jan 2000. It returns the day of the year (an integer in the range 1--366) as a real. @node tm_year, valid, tm_yday, Functions @subsubsection tm_year @c ?expressions tm_year @findex tm_year @c ?functions tm_year The @ref{tm_year} function interprets its argument as a time, in seconds from 1 Jan 2000. It returns the year (an integer) as a real. @node valid, , tm_year, Functions @subsubsection valid @c ?expressions functions valid @c ?functions valid @cindex valid @findex valid `valid(x)` may be used only in expressions as part of @ref{using} manipulations to fits or datafile plots. See @ref{using}. @uref{http://www.gnuplot.vt.edu/gnuplot/gpdocs/airfoil.html,Use of functions and complex variables for airfoils } @node Operators, User-defined, Functions, Expressions @subsection Operators @c ?expressions operators @cindex operators The operators in `gnuplot` are the same as the corresponding operators in the C programming language, except that all operators accept integer, real, and complex arguments, unless otherwise noted. The ** operator (exponentiation) is supported, as in FORTRAN. Parentheses may be used to change order of evaluation. @menu * Unary:: * Binary:: * Ternary:: @end menu @node Unary, Binary, Operators, Operators @subsubsection Unary @c ?expressions operators unary @c ?operators unary @cindex unary The following is a list of all the unary operators and their usages: @example Symbol Example Explanation - -a unary minus + +a unary plus (no-operation) ~ ~a * one's complement ! !a * logical negation ! a! * factorial $ $3 * call arg/column during @ref{using} manipulation @end example (*) Starred explanations indicate that the operator requires an integer argument. Operator precedence is the same as in Fortran and C. As in those languages, parentheses may be used to change the order of operation. Thus -2**2 = -4, but (-2)**2 = 4. The factorial operator returns a real number to allow a greater range. @node Binary, Ternary, Unary, Operators @subsubsection Binary @c ?expressions operators binary @c ?operators binary @cindex binary The following is a list of all the binary operators and their usages: @example Symbol Example Explanation ** a**b exponentiation * a*b multiplication / a/b division % a%b * modulo + a+b addition - a-b subtraction == a==b equality != a!=b inequality < a a>b greater than >= a>=b greater than or equal to & a&b * bitwise AND ^ a^b * bitwise exclusive OR | a|b * bitwise inclusive OR && a&&b * logical AND || a||b * logical OR @end example (*) Starred explanations indicate that the operator requires integer arguments. Logical AND (&&) and OR (||) short-circuit the way they do in C. That is, the second `&&` operand is not evaluated if the first is false; the second `||` operand is not evaluated if the first is true. @node Ternary, , Binary, Operators @subsubsection Ternary @c ?expressions operators ternary @c ?operators ternary @cindex ternary There is a single ternary operator: @example Symbol Example Explanation ?: a?b:c ternary operation @end example The ternary operator behaves as it does in C. The first argument (a), which must be an integer, is evaluated. If it is true (non-zero), the second argument (b) is evaluated and returned; otherwise the third argument (c) is evaluated and returned. The ternary operator is very useful both in constructing piecewise functions and in plotting points only when certain conditions are met. Examples: Plot a function that is to equal sin(x) for 0 <= x < 1, 1/x for 1 <= x < 2, and undefined elsewhere: @example f(x) = 0<=x && x<1 ? sin(x) : 1<=x && x<2 ? 1/x : 1/0 plot f(x) @end example @c ^ [ternary.gif] Note that `gnuplot` quietly ignores undefined values, so the final branch of the function (1/0) will produce no plottable points. Note also that f(x) will be plotted as a continuous function across the discontinuity if a line style is used. To plot it discontinuously, create separate functions for the two pieces. (Parametric functions are also useful for this purpose.) For data in a file, plot the average of the data in columns 2 and 3 against the datum in column 1, but only if the datum in column 4 is non-negative: @example plot 'file' using 1:( $4<0 ? 1/0 : ($2+$3)/2 ) @end example Please see @ref{using} for an explanation of the @ref{using} syntax. @node User-defined, , Operators, Expressions @subsection User-defined @c ?expressions user-defined @cindex user-defined @cindex variables @opindex variables New user-defined variables and functions of one through five variables may be declared and used anywhere, including on the @ref{plot} command itself. User-defined function syntax: @example ( @{,@} ... @{,@} ) = @end example where is defined in terms of through . User-defined variable syntax: @example = @end example Examples: @example w = 2 q = floor(tan(pi/2 - 0.1)) f(x) = sin(w*x) sinc(x) = sin(pi*x)/(pi*x) delta(t) = (t == 0) ramp(t) = (t > 0) ? t : 0 min(a,b) = (a < b) ? a : b comb(n,k) = n!/(k!*(n-k)!) len3d(x,y,z) = sqrt(x*x+y*y+z*z) plot f(x) = sin(x*a), a = 0.2, f(x), a = 0.4, f(x) @end example @c ^ [userdefined.gif] Note that the variable `pi` is already defined. But it is in no way magic; you may redefine it to be whatever you like. Valid names are the same as in most programming languages: they must begin with a letter, but subsequent characters may be letters, digits, "$", or "_". Note, however, that the `fit` mechanism uses several variables with names that begin "FIT_". It is safest to avoid using such names. "FIT_LIMIT", however, is one that you may wish to redefine. See the documentation on `fit` for details. See @ref{functions}, @ref{variables}, and `fit`. @node Glossary, Plotting, Expressions, gnuplot @section Glossary @cindex glossary Throughout this document an attempt has been made to maintain consistency of nomenclature. This cannot be wholly successful because as `gnuplot` has evolved over time, certain command and keyword names have been adopted that preclude such perfection. This section contains explanations of the way some of these terms are used. A "page" or "screen" is the entire area addressable by `gnuplot`. On a monitor, it is the full screen; on a plotter, it is a single sheet of paper. A screen may contain one or more "plots". A plot is defined by an abscissa and an ordinate, although these need not actually appear on it, as well as the margins and any text written therein. A plot contains one "graph". A graph is defined by an abscissa and an ordinate, although these need not actually appear on it. A graph may contain one or more "lines". A line is a single function or data set. "Line" is also a plotting style. The word will also be used in sense "a line of text". Presumably the context will remove any ambiguity. The lines on a graph may have individual names. These may be listed together with a sample of the plotting style used to represent them in the "key", sometimes also called the "legend". The word "title" occurs with multiple meanings in `gnuplot`. In this document, it will always be preceded by the adjective "plot", "line", or "key" to differentiate among them. A graph may have up to four labelled axes. Various commands have the name of an axis built into their names, such as @ref{xlabel}. Other commands have one or more axis names as options, such as `set logscale xy`. The names of the four axes for these usages are "x" for the axis along the bottom border of the plot, "y" for the left border, "x2" for the top border, and "y2" for the right border. "z" also occurs in commands used with 3-d plotting. When discussing data files, the term "record" will be resurrected and used to denote a single line of text in the file, that is, the characters between newline or end-of-record characters. A "point" is the datum extracted from a single record. A "datablock" is a set of points from consecutive records, delimited by blank records. A line, when referred to in the context of a data file, is a subset of a datablock. @node Plotting, Start-up, Glossary, gnuplot @section Plotting @cindex plotting There are three `gnuplot` commands which actually create a plot: @ref{plot}, `splot` and @ref{replot}. @ref{plot} generates 2-d plots, `splot` generates 3-d plots (actually 2-d projections, of course), and @ref{replot} appends its arguments to the previous @ref{plot} or `splot` and executes the modified command. Much of the general information about plotting can be found in the discussion of @ref{plot}; information specific to 3-d can be found in the `splot` section. @ref{plot} operates in either rectangular or polar coordinates -- see `set polar` for details of the latter. `splot` operates only in rectangular coordinates, but the @ref{mapping} command allows for a few other coordinate systems to be treated. In addition, the @ref{using} option allows both @ref{plot} and `splot` to treat almost any coordinate system you'd care to define. `splot` can plot surfaces and contours in addition to points and/or lines. In addition to `splot`, see @ref{isosamples} for information about defining the grid for a 3-d function; `splot datafile` for information about the requisite file structure for 3-d data values; and @ref{contour} and @ref{cntrparam} for information about contours. @node Start-up, Substitution, Plotting, gnuplot @section Start-up @cindex startup @cindex start @cindex .gnuplot When `gnuplot` is run, it looks for an initialization file to load. This file is called `.gnuplot` on Unix and AmigaOS systems, and `GNUPLOT.INI` on other systems. If this file is not found in the current directory, the program will look for it in the home directory (under AmigaOS, Atari(single)TOS, MS-DOS and OS/2, the environment variable `gnuplot` should contain the name of this directory). Note: if NOCWDRC is defined during the installation, `gnuplot` will not read from the current directory. If the initialization file is found, `gnuplot` executes the commands in it. These may be any legal `gnuplot` commands, but typically they are limited to setting the terminal and defining frequently-used functions or variables. @node Substitution, Syntax, Start-up, gnuplot @section Substitution @cindex substitution Command-line substitution is specified by a system command enclosed in backquotes. This command is spawned and the output it produces replaces the name of the command (and backquotes) on the command line. Some implementations also support pipes; see @ref{special-filenames}. Newlines in the output produced by the spawned command are replaced with blanks. Command-line substitution can be used anywhere on the `gnuplot` command line. Example: This will run the program `leastsq` and replace `leastsq` (including backquotes) on the command line with its output: @example f(x) = `leastsq` @end example or, in VMS @example f(x) = `run leastsq` @end example @node Syntax, Time/Date_data, Substitution, gnuplot @section Syntax @cindex syntax @cindex specify @cindex punctuation The general rules of syntax and punctuation in `gnuplot` are that keywords and options are order-dependent. Options and any accompanying parameters are separated by spaces whereas lists and coordinates are separated by commas. Ranges are separated by colons and enclosed in brackets [], text and file names are enclosed in quotes, and a few miscellaneous things are enclosed in parentheses. Braces @{@} are used for a few special purposes. Commas are used to separate coordinates on the `set` commands @ref{arrow}, @ref{key}, and @ref{label}; the list of variables being fitted (the list after the `via` keyword on the `fit` command); lists of discrete contours or the loop parameters which specify them on the @ref{cntrparam} command; the arguments of the `set` commands @ref{dgrid3d}, @ref{dummy}, @ref{isosamples}, @ref{offsets}, @ref{origin}, @ref{samples}, @ref{size}, `time`, and @ref{view}; lists of tics or the loop parameters which specify them; the offsets for titles and axis labels; parametric functions to be used to calculate the x, y, and z coordinates on the @ref{plot}, @ref{replot} and `splot` commands; and the complete sets of keywords specifying individual plots (data sets or functions) on the @ref{plot}, @ref{replot} and `splot` commands. Parentheses are used to delimit sets of explicit tics (as opposed to loop parameters) and to indicate computations in the @ref{using} filter of the `fit`, @ref{plot}, @ref{replot} and `splot` commands. (Parentheses and commas are also used as usual in function notation.) Brackets are used to delimit ranges, whether they are given on `set`, @ref{plot} or `splot` commands. Colons are used to separate extrema in `range` specifications (whether they are given on `set`, @ref{plot} or `splot` commands) and to separate entries in the @ref{using} filter of the @ref{plot}, @ref{replot}, `splot` and `fit` commands. Semicolons are used to separate commands given on a single command line. Braces are used in text to be specially processed by some terminals, like `postscript`. They are also used to denote complex numbers: @{3,2@} = 3 + 2i. Text may be enclosed in single- or double-quotes. Backslash processing of sequences like \n (newline) and \345 (octal character code) is performed for double-quoted strings, but not for single-quoted strings. The justification is the same for each line of a multi-line string. Thus the center-justified string @example "This is the first line of text.\nThis is the second line." @end example will produce @example This is the first line of text. This is the second line. @end example but @example 'This is the first line of text.\nThis is the second line.' @end example will produce @example This is the first line of text.\nThis is the second line. @end example Filenames may be entered with either single- or double-quotes. In this manual the command examples generally single-quote filenames and double-quote other string tokens for clarity. At present you should not embed \n inside @{@} when using the enhanced option of the postscript terminal. The EEPIC, Imagen, Uniplex, LaTeX, and TPIC drivers allow a newline to be specified by \\ in a single-quoted string or \\\\ in a double-quoted string. Back-quotes are used to enclose system commands for substitution. @node Time/Date_data, , Syntax, gnuplot @section Time/Date data @cindex time/date `gnuplot` supports the use of time and/or date information as input data. This feature is activated by the commands `set xdata time`, `set ydata time`, etc. Internally all times and dates are converted to the number of seconds from the year 2000. The command @ref{timefmt} defines the format for all inputs: data files, ranges, tics, label positions---in short, anything that accepts a data value must receive it in this format. Since only one input format can be in force at a given time, all time/date quantities being input at the same time must be presented in the same format. Thus if both x and y data in a file are time/date, they must be in the same format. The conversion to and from seconds assumes Universal Time (which is the same as Greenwich Standard Time). There is no provision for changing the time zone or for daylight savings. If all your data refer to the same time zone (and are all either daylight or standard) you don't need to worry about these things. But if the absolute time is crucial for your application, you'll need to convert to UT yourself. Commands like @ref{xrange} will re-interpret the integer according to @ref{timefmt}. If you change @ref{timefmt}, and then `show` the quantity again, it will be displayed in the new @ref{timefmt}. For that matter, if you give the deactivation command (like @ref{xdata}), the quantity will be shown in its numerical form. The command `set format` defines the format that will be used for tic labels, whether or not the specified axis is time/date. If time/date information is to be plotted from a file, the @ref{using} option _must_ be used on the @ref{plot} or `splot` command. These commands simply use white space to separate columns, but white space may be embedded within the time/date string. If you use tabs as a separator, some trial-and-error may be necessary to discover how your system treats them. The following example demonstrates time/date plotting. Suppose the file "data" contains records like @example 03/21/95 10:00 6.02e23 @end example This file can be plotted by @example set xdata time set timefmt "%m/%d/%y" set xrange ["03/21/95":"03/22/95"] set format x "%m/%d" set timefmt "%m/%d/%y %H:%M" plot "data" using 1:3 @end example which will produce xtic labels that look like "03/21". See the descriptions of each command for more details. @node Commands, Graphical_User_Interfaces, gnuplot, Top @chapter Commands @cindex commands This section lists the commands acceptable to `gnuplot` in alphabetical order. Printed versions of this document contain all commands; on-line versions may not be complete. Indeed, on some systems there may be no commands at all listed under this heading. Note that in most cases unambiguous abbreviations for command names and their options are permissible, i.e., "`p f(x) w l`" instead of "`plot f(x) with lines`". In the syntax descriptions, braces (@{@}) denote optional arguments and a vertical bar (|) separates mutually exclusive choices. @menu * cd:: * call:: * clear:: * exit:: * fit:: * help:: * if:: * load:: * pause:: * plot:: * print:: * pwd:: * quit:: * replot:: * reread:: * reset:: * save:: * set-show:: * shell:: * splot:: * test:: * update:: @end menu @node cd, call, Commands, Commands @section cd @c ?commands cd @cindex cd @cmindex cd The @ref{cd} command changes the working directory. Syntax: @example cd '' @end example The directory name must be enclosed in quotes. Examples: @example cd 'subdir' cd ".." @end example DOS users _must_ use single-quotes---backslash [\] has special significance inside double-quotes. For example, @example cd "c:\newdata" @end example fails, but @example cd 'c:\newdata' @end example works as expected. @node call, clear, cd, Commands @section call @c ?commands call @cindex call @cmindex call The @ref{call} command is identical to the load command with one exception: you can have up to ten additional parameters to the command (delimited according to the standard parser rules) which can be substituted into the lines read from the file. As each line is read from the @ref{call}ed input file, it is scanned for the sequence `$` (dollar-sign) followed by a digit (0--9). If found, the sequence is replaced by the corresponding parameter from the @ref{call} command line. If the parameter was specified as a string in the @ref{call} line, it is substituted without its enclosing quotes. `$` followed by any character other than a digit will be that character. E.g. use `$$` to get a single `$`. Providing more than ten parameters on the @ref{call} command line will cause an error. A parameter that was not provided substitutes as nothing. Files being @ref{call}ed may themselves contain @ref{call} or @ref{load} commands. The @ref{call} command _must_ be the last command on a multi-command line. Syntax: @example call "" ... @end example The name of the input file must be enclosed in quotes, and it is recommended that parameters are similarly enclosed in quotes (future versions of gnuplot may treat quoted and unquoted arguments differently). Example: If the file 'calltest.gp' contains the line: @example print "p0=$0 p1=$1 p2=$2 p3=$3 p4=$4 p5=$5 p6=$6 p7=x$7x" @end example entering the command: @example call 'calltest.gp' "abcd" 1.2 + "'quoted'" -- "$2" @end example will display: @example p0=abcd p1=1.2 p2=+ p3='quoted' p4=- p5=- p6=$2 p7=xx @end example NOTE: there is a clash in syntax with the datafile @ref{using} callback operator. Use `$$n` or `column(n)` to access column n from a datafile inside a @ref{call}ed datafile plot. @node clear, exit, call, Commands @section clear @c ?commands clear @cindex clear @cmindex clear The @ref{clear} command erases the current screen or output device as specified by @ref{output}. This usually generates a formfeed on hardcopy devices. Use @ref{terminal} to set the device type. For some terminals @ref{clear} erases only the portion of the plotting surface defined by @ref{size}, so for these it can be used in conjunction with @ref{multiplot} to create an inset. Example: @example set multiplot plot sin(x) set origin 0.5,0.5 set size 0.4,0.4 clear plot cos(x) set nomultiplot @end example Please see @ref{multiplot}, @ref{size}, and @ref{origin} for details of these commands. @node exit, fit, clear, Commands @section exit @c ?commands exit @cindex exit @cmindex exit The commands @ref{exit} and @ref{quit} and the END-OF-FILE character will exit the current `gnuplot` command file and @ref{load} the next one. See "help batch/interactive" for more details. Each of these commands will clear the output device (as does the @ref{clear} command) before exiting. @node fit, help, exit, Commands @section fit @c ?commands fit @cindex fit @cmindex fit @cindex least-squares @cindex Marquardt The `fit` command can fit a user-defined function to a set of data points (x,y) or (x,y,z), using an implementation of the nonlinear least-squares (NLLS) Marquardt-Levenberg algorithm. Any user-defined variable occurring in the function body may serve as a fit parameter, but the return type of the function must be real. Syntax: @example fit @{[xrange] @{[yrange]@}@} '' @{datafile-modifiers@} via '' | @{,,...@} @end example Ranges may be specified to temporarily limit the data which is to be fitted; any out-of-range data points are ignored. The syntax is @example [@{dummy_variable=@}@{@}@{:@}], @end example analogous to @ref{plot}; see @ref{ranges}. is any valid `gnuplot` expression, although it is usual to use a previously user-defined function of the form f(x) or f(x,y). is treated as in the @ref{plot} command. All the `plot datafile` modifiers (@ref{using}, @ref{every},...) except @ref{smooth} are applicable to `fit`. See `plot datafile`. The default data formats for fitting functions with a single independent variable, y=f(x), are @{x:@}y or x:y:s; those formats can be changed with the datafile @ref{using} qualifier. The third item, (a column number or an expression), if present, is interpreted as the standard deviation of the corresponding y value and is used to compute a weight for the datum, 1/s**2. Otherwise, all data points are weighted equally, with a weight of one. To fit a function with two independent variables, z=f(x,y), the required format is @ref{using} with four items, x:y:z:s. The complete format must be given---no default columns are assumed for a missing token. Weights for each data point are evaluated from 's' as above. If error estimates are not available, a constant value can be specified as a constant expression (see @ref{using}), e.g., `using 1:2:3:(1)`. Multiple datasets may be simultaneously fit with functions of one independent variable by making y a 'pseudo-variable', e.g., the dataline number, and fitting as two independent variables. See `fit multibranch`. The `via` qualifier specifies which parameters are to be adjusted, either directly, or by referencing a parameter file. Examples: @example f(x) = a*x**2 + b*x + c g(x,y) = a*x**2 + b*y**2 + c*x*y FIT_LIMIT = 1e-6 fit f(x) 'measured.dat' via 'start.par' fit f(x) 'measured.dat' using 3:($7-5) via 'start.par' fit f(x) './data/trash.dat' using 1:2:3 via a, b, c fit g(x,y) 'surface.dat' using 1:2:3:(1) via a, b, c @end example After each iteration step, detailed information about the current state of the fit is written to the display. The same information about the initial and final states is written to a log file, "fit.log". This file is always appended to, so as to not lose any previous fit history; it should be deleted or renamed as desired. The fit may be interrupted by pressing Ctrl-C (any key but Ctrl-C under MSDOS and Atari Multitasking Systems). After the current iteration completes, you have the option to (1) stop the fit and accept the current parameter values, (2) continue the fit, (3) execute a `gnuplot` command as specified by the environment variable FIT_SCRIPT. The default for FIT_SCRIPT is @ref{replot}, so if you had previously plotted both the data and the fitting function in one graph, you can display the current state of the fit. Once `fit` has finished, the @ref{update} command may be used to store final values in a file for subsequent use as a parameter file. See @ref{update} for details. @menu * adjustable_parameters:: * beginner's_guide:: * error_estimates:: * fit_controlling:: * multi-branch:: * starting_values:: * tips:: @end menu @node adjustable_parameters, beginner's_guide, fit, fit @subsection adjustable parameters @c ?commands fit parameters @c ?fit parameters @c ?commands fit adjustable_parameters @c ?fit adjustable_parameters @cindex fit_parameters There are two ways that `via` can specify the parameters to be adjusted, either directly on the command line or indirectly, by referencing a parameter file. The two use different means to set initial values. Adjustable parameters can be specified by a comma-separated list of variable names after the `via` keyword. Any variable that is not already defined is is created with an initial value of 1.0. However, the fit is more likely to converge rapidly if the variables have been previously declared with more appropriate starting values. In a parameter file, each parameter to be varied and a corresponding initial value are specified, one per line, in the form @example varname = value @end example Comments, marked by '#', and blank lines are permissible. The special form @example varname = value # FIXED @end example means that the variable is treated as a 'fixed parameter', initialized by the parameter file, but not adjusted by `fit`. For clarity, it may be useful to designate variables as fixed parameters so that their values are reported by `fit`. The keyword `# FIXED` has to appear in exactly this form. @node beginner's_guide, error_estimates, adjustable_parameters, fit @subsection beginner's guide @c ?commands fit beginners_guide @c ?fit beginners_guide @c ?fit guide @cindex fitting `fit` is used to find a set of parameters that 'best' fits your data to your user-defined function. The fit is judged on the basis of the the sum of the squared differences or 'residuals' (SSR) between the input data points and the function values, evaluated at the same places. This quantity is often called 'chisquare' (i.e., the Greek letter chi, to the power of 2). The algorithm attempts to minimize SSR, or more precisely, WSSR, as the residuals are 'weighted' by the input data errors (or 1.0) before being squared; see `fit error_estimates` for details. That's why it is called 'least-squares fitting'. Let's look at an example to see what is meant by 'non-linear', but first we had better go over some terms. Here it is convenient to use z as the dependent variable for user-defined functions of either one independent variable, z=f(x), or two independent variables, z=f(x,y). A parameter is a user-defined variable that `fit` will adjust, i.e., an unknown quantity in the function declaration. Linearity/non-linearity refers to the relationship of the dependent variable, z, to the parameters which `fit` is adjusting, not of z to the independent variables, x and/or y. (To be technical, the second @{and higher@} derivatives of the fitting function with respect to the parameters are zero for a linear least-squares problem). For linear least-squares (LLS), the user-defined function will be a sum of simple functions, not involving any parameters, each multiplied by one parameter. NLLS handles more complicated functions in which parameters can be used in a large number of ways. An example that illustrates the difference between linear and nonlinear least-squares is the Fourier series. One member may be written as @example z=a*sin(c*x) + b*cos(c*x). @end example If a and b are the unknown parameters and c is constant, then estimating values of the parameters is a linear least-squares problem. However, if c is an unknown parameter, the problem is nonlinear. In the linear case, parameter values can be determined by comparatively simple linear algebra, in one direct step. However LLS is a special case which is also solved along with more general NLLS problems by the iterative procedure that `gnuplot` uses. `fit` attempts to find the minimum by doing a search. Each step (iteration) calculates WSSR with a new set of parameter values. The Marquardt-Levenberg algorithm selects the parameter values for the next iteration. The process continues until a preset criterium is met, either (1) the fit has "converged" (the relative change in WSSR is less than FIT_LIMIT), or (2) it reaches a preset iteration count limit, FIT_MAXITER (see @ref{variables}). The fit may also be interrupted and subsequently halted from the keyboard (see `fit`). Often the function to be fitted will be based on a model (or theory) that attempts to describe or predict the behaviour of the data. Then `fit` can be used to find values for the free parameters of the model, to determine how well the data fits the model, and to estimate an error range for each parameter. See `fit error_estimates`. Alternatively, in curve-fitting, functions are selected independent of a model (on the basis of experience as to which are likely to describe the trend of the data with the desired resolution and a minimum number of parameters*functions.) The `fit` solution then provides an analytic representation of the curve. However, if all you really want is a smooth curve through your data points, the @ref{smooth} option to @ref{plot} may be what you've been looking for rather than `fit`. @node error_estimates, fit_controlling, beginner's_guide, fit @subsection error estimates @c ?commands fit error_estimate @c ?fit error_estimate @c ?fit errors In `fit`, the term "error" is used in two different contexts, data error estimates and parameter error estimates. Data error estimates are used to calculate the relative weight of each data point when determining the weighted sum of squared residuals, WSSR or chisquare. They can affect the parameter estimates, since they determine how much influence the deviation of each data point from the fitted function has on the final values. Some of the `fit` output information, including the parameter error estimates, is more meaningful if accurate data error estimates have been provided. The 'statistical overview' describes some of the `fit` output and gives some background for the 'practical guidelines'. @menu * statistical_overview:: * practical_guidelines:: @end menu @node statistical_overview, practical_guidelines, error_estimates, error_estimates @subsubsection statistical overview @c ?commands fit error statistical_overview @c ?fit error statistical_overview @cindex statistical_overview The theory of non-linear least-squares (NLLS) is generally described in terms of a normal distribution of errors, that is, the input data is assumed to be a sample from a population having a given mean and a Gaussian (normal) distribution about the mean with a given standard deviation. For a sample of sufficiently large size, and knowing the population standard deviation, one can use the statistics of the chisquare distribution to describe a "goodness of fit" by looking at the variable often called "chisquare". Here, it is sufficient to say that a reduced chisquare (chisquare/degrees of freedom, where degrees of freedom is the number of datapoints less the number of parameters being fitted) of 1.0 is an indication that the weighted sum of squared deviations between the fitted function and the data points is the same as that expected for a random sample from a population characterized by the function with the current value of the parameters and the given standard deviations. If the standard deviation for the population is not constant, as in counting statistics where variance = counts, then each point should be individually weighted when comparing the observed sum of deviations and the expected sum of deviations. At the conclusion `fit` reports 'stdfit', the standard deviation of the fit, which is the rms of the residuals, and the variance of the residuals, also called 'reduced chisquare' when the data points are weighted. The number of degrees of freedom (the number of data points minus the number of fitted parameters) is used in these estimates because the parameters used in calculating the residuals of the datapoints were obtained from the same data. To estimate confidence levels for the parameters, one can use the minimum chisquare obtained from the fit and chisquare statistics to determine the value of chisquare corresponding to the desired confidence level, but considerably more calculation is required to determine the combinations of parameters which produce such values. Rather than determine confidence intervals, `fit` reports parameter error estimates which are readily obtained from the variance-covariance matrix after the final iteration. By convention, these estimates are called "standard errors" or "asymptotic standard errors", since they are calculated in the same way as the standard errors (standard deviation of each parameter) of a linear least-squares problem, even though the statistical conditions for designating the quantity calculated to be a standard deviation are not generally valid for the NLLS problem. The asymptotic standard errors are generally over-optimistic and should not be used for determining confidence levels, but are useful for qualitative purposes. The final solution also produces a correlation matrix, which gives an indication of the correlation of parameters in the region of the solution; if one parameter is changed, increasing chisquare, does changing another compensate? The main diagonal elements, autocorrelation, are all 1; if all parameters were independent, all other elements would be nearly 0. Two variables which completely compensate each other would have an off-diagonal element of unit magnitude, with a sign depending on whether the relation is proportional or inversely proportional. The smaller the magnitudes of the off-diagonal elements, the closer the estimates of the standard deviation of each parameter would be to the asymptotic standard error. @node practical_guidelines, , statistical_overview, error_estimates @subsubsection practical guidelines @c ?commands fit error practical_guidelines @c ?fit error practical_guidelines @cindex practical_guidelines @cindex guidelines If you have a basis for assigning weights to each data point, doing so lets you make use of additional knowledge about your measurements, e.g., take into account that some points may be more reliable than others. That may affect the final values of the parameters. Weighting the data provides a basis for interpreting the additional `fit` output after the last iteration. Even if you weight each point equally, estimating an average standard deviation rather than using a weight of 1 makes WSSR a dimensionless variable, as chisquare is by definition. Each fit iteration will display information which can be used to evaluate the progress of the fit. (An '*' indicates that it did not find a smaller WSSR and is trying again.) The 'sum of squares of residuals', also called 'chisquare', is the WSSR between the data and your fitted function; `fit` has minimized that. At this stage, with weighted data, chisquare is expected to approach the number of degrees of freedom (data points minus parameters). The WSSR can be used to calculate the reduced chisquare (WSSR/ndf) or stdfit, the standard deviation of the fit, sqrt(WSSR/ndf). Both of these are reported for the final WSSR. If the data are unweighted, stdfit is the rms value of the deviation of the data from the fitted function, in user units. If you supplied valid data errors, the number of data points is large enough, and the model is correct, the reduced chisquare should be about unity. (For details, look up the 'chi-squared distribution' in your favourite statistics reference.) If so, there are additional tests, beyond the scope of this overview, for determining how well the model fits the data. A reduced chisquare much larger than 1.0 may be due to incorrect data error estimates, data errors not normally distributed, systematic measurement errors, 'outliers', or an incorrect model function. A plot of the residuals, e.g., `plot 'datafile' using 1:($2-f($1))`, may help to show any systematic trends. Plotting both the data points and the function may help to suggest another model. Similarly, a reduced chisquare less than 1.0 indicates WSSR is less than that expected for a random sample from the function with normally distributed errors. The data error estimates may be too large, the statistical assumptions may not be justified, or the model function may be too general, fitting fluctuations in a particular sample in addition to the underlying trends. In the latter case, a simpler function may be more appropriate. You'll have to get used to both `fit` and the kind of problems you apply it to before you can relate the standard errors to some more practical estimates of parameter uncertainties or evaluate the significance of the correlation matrix. Note that `fit`, in common with most NLLS implementations, minimizes the weighted sum of squared distances (y-f(x))**2. It does not provide any means to account for "errors" in the values of x, only in y. Also, any "outliers" (data points outside the normal distribution of the model) will have an exaggerated effect on the solution. @node fit_controlling, multi-branch, error_estimates, fit @subsection fit controlling @c ?commands fit_control @cindex fit_control @c ?fit control There are a number of `gnuplot` variables that can be defined to affect `fit`. Those which can be defined once `gnuplot` is running are listed under 'control_variables' while those defined before starting `gnuplot` are listed under 'environment_variables'. @menu * control_variables:: * environment_variables:: @end menu @node control_variables, environment_variables, fit_controlling, fit_controlling @subsubsection control variables @c ?commands fit_control variables @c ?fit_control variables @c ?fit control variables The default epsilon limit (1e-5) may be changed by declaring a value for @example FIT_LIMIT @end example When the sum of squared residuals changes between two iteration steps by a factor less than this number (epsilon), the fit is considered to have 'converged'. The maximum number of iterations may be limited by declaring a value for @example FIT_MAXITER @end example A value of 0 (or not defining it at all) means that there is no limit. If you need even more control about the algorithm, and know the Marquardt-Levenberg algorithm well, there are some more variables to influence it. The startup value of `lambda` is normally calculated automatically from the ML-matrix, but if you want to, you may provide your own one with @example FIT_START_LAMBDA @end example Specifying FIT_START_LAMBDA as zero or less will re-enable the automatic selection. The variable @example FIT_LAMBDA_FACTOR @end example gives the factor by which `lambda` is increased or decreased whenever the chi-squared target function increased or decreased significantly. Setting FIT_LAMBDA_FACTOR to zero re-enables the default factor of 10.0. Oher variables with the FIT_ prefix may be added to `fit`, so it is safer not to use that prefix for user-defined variables. The variables FIT_SKIP and FIT_INDEX were used by earlier releases of `gnuplot` with a 'fit' patch called `gnufit` and are no longer available. The datafile @ref{every} modifier provides the functionality of FIT_SKIP. FIT_INDEX was used for multi-branch fitting, but multi-branch fitting of one independent variable is now done as a pseudo-3D fit in which the second independent variable and @ref{using} are used to specify the branch. See @ref{multi-branch}. @node environment_variables, , control_variables, fit_controlling @subsubsection environment variables @c ?commands fit_control environment @c ?fit_control environment @c ?fit control environment The environment variables must be defined before `gnuplot` is executed; how to do so depends on your operating system. @example FIT_LOG @end example changes the name (and/or path) of the file to which the fit log will be written from the default of "fit.log" in the working directory. @example FIT_SCRIPT @end example specifies a command that may be executed after an user interrupt. The default is @ref{replot}, but a @ref{plot} or @ref{load} command may be useful to display a plot customized to highlight the progress of the fit. @node multi-branch, starting_values, fit_controlling, fit @subsection multi-branch @c ?commands fit multi-branch @c ?fit multi-branch @cindex multi-branch @cindex branch In multi-branch fitting, multiple data sets can be simultaneously fit with functions of one independent variable having common parameters by minimizing the total WSSR. The function and parameters (branch) for each data set are selected by using a 'pseudo-variable', e.g., either the dataline number (a 'column' index of -1) or the datafile index (-2), as the second independent variable. Example: Given two exponential decays of the form, z=f(x), each describing a different data set but having a common decay time, estimate the values of the parameters. If the datafile has the format x:z:s, then @example f(x,y) = (y==0) ? a*exp(-x/tau) : b*exp(-x/tau) fit f(x,y) 'datafile' using 1:-1:2:3 via a, b, tau @end example For a more complicated example, see the file "hexa.fnc" used by the "fit.dem" demo. Appropriate weighting may be required since unit weights may cause one branch to predominate if there is a difference in the scale of the dependent variable. Fitting each branch separately, using the multi-branch solution as initial values, may give an indication as to the relative effect of each branch on the joint solution. @node starting_values, tips, multi-branch, fit @subsection starting values @c ?commands fit starting_values @c ?fit starting_values @cindex starting_values Nonlinear fitting is not guaranteed to converge to the global optimum (the solution with the smallest sum of squared residuals, SSR), and can get stuck at a local minimum. The routine has no way to determine that; it is up to you to judge whether this has happened. `fit` may, and often will get "lost" if started far from a solution, where SSR is large and changing slowly as the parameters are varied, or it may reach a numerically unstable region (e.g., too large a number causing a floating point overflow) which results in an "undefined value" message or `gnuplot` halting. To improve the chances of finding the global optimum, you should set the starting values at least roughly in the vicinity of the solution, e.g., within an order of magnitude, if possible. The closer your starting values are to the solution, the less chance of stopping at another minimum. One way to find starting values is to plot data and the fitting function on the same graph and change parameter values and @ref{replot} until reasonable similarity is reached. The same plot is also useful to check whether the fit stopped at a minimum with a poor fit. Of course, a reasonably good fit is not proof there is not a "better" fit (in either a statistical sense, characterized by an improved goodness-of-fit criterion, or a physical sense, with a solution more consistent with the model.) Depending on the problem, it may be desirable to `fit` with various sets of starting values, covering a reasonable range for each parameter. @node tips, , starting_values, fit @subsection tips @c ?commands fit tips @c ?fit tips @cindex tips Here are some tips to keep in mind to get the most out of `fit`. They're not very organized, so you'll have to read them several times until their essence has sunk in. The two forms of the `via` argument to `fit` serve two largely distinct purposes. The `via "file"` form is best used for (possibly unattended) batch operation, where you just supply the startup values in a file and can later use @ref{update} to copy the results back into another (or the same) parameter file. The `via var1, var2, ...` form is best used interactively, where the command history mechanism may be used to edit the list of parameters to be fitted or to supply new startup values for the next try. This is particularly useful for hard problems, where a direct fit to all parameters at once won't work without good starting values. To find such, you can iterate several times, fitting only some of the parameters, until the values are close enough to the goal that the final fit to all parameters at once will work. Make sure that there is no mutual dependency among parameters of the function you are fitting. For example, don't try to fit a*exp(x+b), because a*exp(x+b)=a*exp(b)*exp(x). Instead, fit either a*exp(x) or exp(x+b). A technical issue: the parameters must not be too different in magnitude. The larger the ratio of the largest and the smallest absolute parameter values, the slower the fit will converge. If the ratio is close to or above the inverse of the machine floating point precision, it may take next to forever to converge, or refuse to converge at all. You will have to adapt your function to avoid this, e.g., replace 'parameter' by '1e9*parameter' in the function definition, and divide the starting value by 1e9. If you can write your function as a linear combination of simple functions weighted by the parameters to be fitted, by all means do so. That helps a lot, because the problem is no longer nonlinear and should converge with only a small number of iterations, perhaps just one. Some prescriptions for analysing data, given in practical experimentation courses, may have you first fit some functions to your data, perhaps in a multi-step process of accounting for several aspects of the underlying theory one by one, and then extract the information you really wanted from the fitting parameters of those functions. With `fit`, this may often be done in one step by writing the model function directly in terms of the desired parameters. Transforming data can also quite often be avoided, though sometimes at the cost of a more difficult fit problem. If you think this contradicts the previous paragraph about simplifying the fit function, you are correct. A "singular matrix" message indicates that this implementation of the Marquardt-Levenberg algorithm can't calculate parameter values for the next iteration. Try different starting values, writing the function in another form, or a simpler function. Finally, a nice quote from the manual of another fitting package (fudgit), that kind of summarizes all these issues: "Nonlinear fitting is an art!" @node help, if, fit, Commands @section help @c ?commands help @cindex help @cmindex help The @ref{help} command displays on-line help. To specify information on a particular topic use the syntax: @example help @{@} @end example If is not specified, a short message is printed about `gnuplot`. After help for the requested topic is given, a menu of subtopics is given; help for a subtopic may be requested by typing its name, extending the help request. After that subtopic has been printed, the request may be extended again or you may go back one level to the previous topic. Eventually, the `gnuplot` command line will return. If a question mark (?) is given as the topic, the list of topics currently available is printed on the screen. @node if, load, help, Commands @section if @c ?commands if @cindex if @cmindex if The @ref{if} command allows commands to be executed conditionally. Syntax: @example if () @end example will be evaluated. If it is true (non-zero), then the command(s) of the will be executed. If is false (zero), then the entire is ignored. Note that use of `;` to allow multiple commands on the same line will _not_ end the conditionalized commands. Examples: @example pi=3 if (pi!=acos(-1)) print "?Fixing pi!"; pi=acos(-1); print pi @end example will display: @example ?Fixing pi! 3.14159265358979 @end example but @example if (1==2) print "Never see this"; print "Or this either" @end example will not display anything. See @ref{reread} for an example of how @ref{if} and @ref{reread} can be used together to perform a loop. @node load, pause, if, Commands @section load @c ?commands load @cindex load @cmindex load The @ref{load} command executes each line of the specified input file as if it had been typed in interactively. Files created by the @ref{save} command can later be @ref{load}ed. Any text file containing valid commands can be created and then executed by the @ref{load} command. Files being @ref{load}ed may themselves contain @ref{load} or @ref{call} commands. See `comment` for information about comments in commands. To @ref{load} with arguments, see @ref{call}. The @ref{load} command _must_ be the last command on a multi-command line. Syntax: @example load "" @end example The name of the input file must be enclosed in quotes. The special filename "-" may be used to @ref{load} commands from standard input. This allows a `gnuplot` command file to accept some commands from standard input. Please see "help batch/interactive" for more details. Examples: @example load 'work.gnu' load "func.dat" @end example The @ref{load} command is performed implicitly on any file names given as arguments to `gnuplot`. These are loaded in the order specified, and then `gnuplot` exits. @node pause, plot, load, Commands @section pause @c ?commands pause @cindex pause @cmindex pause The @ref{pause} command displays any text associated with the command and then waits a specified amount of time or until the carriage return is pressed. @ref{pause} is especially useful in conjunction with @ref{load} files. Syntax: @example pause